EBI Dbfetch

ID   BC058297; SV 1; linear; mRNA; STD; VRT; 1881 BP.
XX
AC   BC058297;
XX
DT   04-OCT-2003 (Rel. 77, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 9)
XX
DE   Danio rerio zgc:66030, mRNA (cDNA clone MGC:66030 IMAGE:6794400), complete
DE   cds.
XX
KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1881
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1881
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (15-SEP-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000012407; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000012611; Danio_rerio.
DR   ImaGenes; IMAGp998M2314302Q.
DR   ImaGenes; IRAKp961I14121Q.
DR   ImaGenes; IRBOp991D117D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Leonard I. Zon, M.D.
CC   cDNA Library Preparation: Invitrogen Corp
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 121 Row: i Column: 14
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 37194842.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1881
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_ZKid1"
FT                   /clone="MGC:66030 IMAGE:6794400"
FT                   /tissue_type="Kidney, zebrafish"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:7955"
FT   gene            1..1881
FT                   /gene="zgc:66030"
FT                   /note="synonym: MGC66030"
FT   CDS             41..1399
FT                   /codon_start=1
FT                   /gene="zgc:66030"
FT                   /product="zgc:66030"
FT                   /db_xref="GOA:Q6PE41"
FT                   /db_xref="InterPro:IPR004139"
FT                   /db_xref="UniProtKB/TrEMBL:Q6PE41"
FT                   /db_xref="ZFIN:ZDB-GENE-040426-1515"
FT                   /protein_id="AAH58297.1"
FT                   /translation="MLRKRSPLVICGAFIFVAWNVVLLFVLMRRPSSPGTFNNQDKPGE
FT                   TEHRAEGGKFGNIMNEVIRVADAFEAELAAQKKILQQIQSHWSVWDSKDGVIPEKSKSE
FT                   VEHTAPVVIPILVIACNRVTVKRCLDKLIEHRPSAELHPIIVSQDCGHRETSDVIGSYG
FT                   SQLTHIKQPDLSDVAVPPQHKKFQGYYKISRHYKWALSQVFNTFSYSSVVVVEDDLEVA
FT                   PDFFEYFRALHPMLKSDPTLWCVSAWNDNGRDGFVDPGKASLLYRTDFFPGLGWMLTKD
FT                   LWAELEPKWPASFWDDWMRHPDQRKDRSCIRPEISRTLTFGRKGVSLGQFYDKYLRFIK
FT                   LNTEFVPFTKMDLSYLEKEKYDESFEKEVYAASLVTLEDLKSGKLSGSGPFRVQYSSPD
FT                   SFKSLARNLGVMDDLKSGVPRAGYRGAVSFLLRGKRVYLAPPAGWSRYDPSWS"
XX
SQ   Sequence 1881 BP; 549 A; 393 C; 442 G; 497 T; 0 other;
     cttccttcct gaatcctgtg tcccatcctg tgtcaaggcc atgctccgca agagaagtcc        60
     tcttgtcatt tgtggtgctt tcatattcgt agcatggaat gttgttctcc tttttgtcct       120
     catgaggcgc ccttcaagtc cagggacttt caataaccag gataaacctg gagagactga       180
     gcacagagcc gaaggaggca agtttggaaa tatcatgaat gaagtgattc gagtagccga       240
     tgcattcgaa gctgaacttg cagctcaaaa gaagatccta cagcagatcc agagccactg       300
     gtcagtgtgg gacagcaaag atggcgtgat tcctgagaag tcgaaatcag aagttgaaca       360
     cacagctccg gtggtcatcc cgattttagt cattgcctgt aatcgcgtga cggtgaaacg       420
     ctgcctggat aaactcatcg agcaccgtcc atcagccgag cttcatccca tcatagtgag       480
     ccaggactgc ggacacagag agacgtctga cgtgattggc tcatacggca gtcagctgac       540
     acacataaaa cagccggatc tatcggatgt cgccgtgcct cctcagcata agaagtttca       600
     gggttactac aaaatctctc gccactacaa atgggccctc agccaggtct tcaacacctt       660
     ttcgtactct tcggttgttg ttgtggagga cgatttggag gtggcccctg atttcttcga       720
     gtacttcaga gcgcttcatc ctatgttaaa atccgacccg acgctgtggt gcgtgtctgc       780
     ctggaatgac aacggccggg atggattcgt agaccctgga aaagcgagcc tcctgtacag       840
     gactgatttt ttcccaggcc tgggctggat gctcacaaaa gacctctggg cagagcttga       900
     gccaaaatgg ccggcctcct tttgggatga ctggatgcgc caccctgatc agcgcaaaga       960
     cagatcctgt atcagaccgg aaatatccag aacgttaacc ttcggtcgaa agggtgtgag      1020
     tttggggcag ttctacgaca agtacctccg ctttattaag ctcaacaccg aatttgtgcc      1080
     ttttacaaaa atggacctgt cttatttaga gaaggagaaa tatgatgaga gctttgagaa      1140
     ggaggtttac gctgcttcac ttgtcacatt ggaggactta aagagtggta aactgtctgg      1200
     atctggccca tttcgggtgc aatattctag tccggacagt tttaaaagtt tggctcgcaa      1260
     tctcggcgta atggacgacc tgaaatctgg agtcccaaga gctgggtata gaggagcagt      1320
     cagctttctt ttacgtggga agagggttta tttagctcca cctgctggtt ggagtcggta      1380
     tgatccaagc tggagttgag gtgggctgtg cctgcttcac atttaaggtg caaagcacac      1440
     taaaaaaata ataatattgc atgtaaacat cattcccttc acagcattga tgagattaat      1500
     tatcattgtg ctgctttatg atggaaaacc tcattgaagg ggtttcagga tgaacgcgat      1560
     accaaagatt ataaacaaac caacttgttg cctcaggttt cattatcatg tctcaatggt      1620
     aggagttata cgatcatttt gattagtcaa atcattaaac tgacagagct aataaatgaa      1680
     aaatcttata atgacatatt tttcacacag tgagtgtttg ttcaggaaca gaacttgagt      1740
     gtaaaatgtg ttttaaaaag taacacttat tttttttaac tgtgaaaacc gatctaagtg      1800
     cctataaatg taggagattg tttgattaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1860
     aaaaaaaaaa aaaaaaaaaa a                                                1881
//