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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC058145; SV 1; linear; mRNA; STD; ROD; 627 BP.
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AC   BC058145;
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DT   18-SEP-2003 (Rel. 77, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 6)
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DE   Rattus norvegicus GABA(A) receptor-associated protein like 2, mRNA (cDNA
DE   clone MGC:72812 IMAGE:6921109), complete cds.
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KW   MGC.
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OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Rattus.
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RN   [1]
RP   1-627
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-627
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (08-SEP-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSRNOG00000019425; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000048998; Rattus_norvegicus.
DR   ImaGenes; IMAGp958I123174Q.
DR   ImaGenes; IRALp962M1952Q.
DR   ImaGenes; IRBQp994C123D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: John C. Marshall, M.D., Ph.D
CC   cDNA Library Preparation: CLONTECH Laboratories, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAL Plate: 52 Row: m Column: 19
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 56961632.
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FH   Key             Location/Qualifiers
FH
FT   source          1..627
FT                   /organism="Rattus norvegicus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_Rr_Pit1"
FT                   /clone="MGC:72812 IMAGE:6921109"
FT                   /tissue_type="Pituitary gland, anterior, rat"
FT                   /note="Vector: pDNR-LIB"
FT                   /db_xref="taxon:10116"
FT   gene            1..627
FT                   /gene="Gabarapl2"
FT                   /note="synonym: Gef2"
FT   CDS             72..425
FT                   /codon_start=1
FT                   /gene="Gabarapl2"
FT                   /product="GABA(A) receptor-associated protein like 2"
FT                   /db_xref="GOA:P60522"
FT                   /db_xref="InterPro:IPR004241"
FT                   /db_xref="UniProtKB/Swiss-Prot:P60522"
FT                   /protein_id="AAH58145.1"
FT                   /translation="MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDID
FT                   KRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGF
FT                   LYVAYSGENTFGF"
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SQ   Sequence 627 BP; 170 A; 137 C; 155 G; 165 T; 0 other;
     gggggttgtt gttgtggtcg cttcgccgaa gtctgcggct caaagagccg gctccgtcgc        60
     ttcccgccgc catgaagtgg atgtttaagg aggaccactc gctggaacac agatgcgtgg       120
     aatccgcgaa gatcagagcg aaataccccg accgggttcc ggtgatcgtt gagaaagtct       180
     ctggctctca gattgttgac attgacaaga ggaagtactt ggtcccatct gacatcactg       240
     tggctcagtt catgtggatc atcaggaaaa ggatccagct tccttctgag aaggccatct       300
     tcttgtttgt ggacaagaca gtcccacagt ccagcctaac tatgggacag ctttacgaga       360
     aggaaaaaga tgaagatgga ttcttgtatg tggcctacag cggagagaac acttttggct       420
     tctgagccct tgctgggcta ggtgcaccct tcctgcttgt gtatcctgta aataactggc       480
     tgttctcagt tactccgccg gagcctccac acagacctac tagtgcattt gtaactggat       540
     ttatttctta atatattgga aggttttgtt ttccttagat tagtaaatta tcatacgaaa       600
     aaaaaaaaaa aaaaaaaaaa aaaaaaa                                           627
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