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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC055647; SV 1; linear; mRNA; STD; VRT; 1619 BP.
XX
AC   BC055647;
XX
DT   05-AUG-2003 (Rel. 76, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 13)
XX
DE   Danio rerio globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like
DE   4, mRNA (cDNA clone MGC:66417 IMAGE:5916403), complete cds.
XX
KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1619
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1619
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000068503; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000099083; Danio_rerio.
DR   ImaGenes; IMAGp998J2013161Q.
DR   ImaGenes; IRAKp961P19122Q.
DR   ImaGenes; IRBOp991A0628D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Sumio Sugano
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 122 Row: p Column: 19
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 33416428.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1619
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="Sugano SJD adult male"
FT                   /clone="MGC:66417 IMAGE:5916403"
FT                   /tissue_type="Whole body, adult male"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1619
FT                   /gene="gbgt1l4"
FT                   /note="synonyms: sb:cb1003, zgc:66417"
FT   CDS             28..1077
FT                   /codon_start=1
FT                   /gene="gbgt1l4"
FT                   /product="globoside
FT                   alpha-1,3-N-acetylgalactosaminyltransferase 1, like 4"
FT                   /db_xref="GOA:Q7SXD8"
FT                   /db_xref="HSSP:1R82"
FT                   /db_xref="InterPro:IPR005076"
FT                   /db_xref="UniProtKB/TrEMBL:Q7SXD8"
FT                   /db_xref="ZFIN:ZDB-GENE-031204-4"
FT                   /protein_id="AAH55647.1"
FT                   /translation="MNRDDTFKKRTRLNPVILVFFGSLVSGLIYLGYTSSSIRFKVQRF
FT                   CFNITKEHQESVLLQLPQGLSFNQPSVVGPDGKIVPVTPWLAPIVWEGTFDPTLIDSVY
FT                   KQQNVTIATTVFALGKYTVFLKEFLESAEQNYFVGFHVHYYIFTDHPEEVPDVKLGEGH
FT                   QLTVMTVDSSNRWQEMTLRRMERLEKLIESRLVKEADYVFSLDVDTKFYARWGAETLGR
FT                   LVGVLHPGYYQTPREQFPYERRPESQAFIPYSEGDYYYGGAVLGGAVKDVYEVAKTCRE
FT                   QLDIDAAKSIEAAWQEESHLNKYFVYNKPSKLLSPEYLWQDFKPQTNEVKIIRFSQVIK
FT                   NYAAVRPNP"
XX
SQ   Sequence 1619 BP; 519 A; 281 C; 325 G; 494 T; 0 other;
     agaagacgat ccagttcacc tgtcaaaatg aatagagacg ataccttcaa aaaaagaacg        60
     cgattaaatc cagttattct ggtgttcttt ggcagcttag tgagtgggct catatatttg       120
     ggctacacct cctcttccat cagatttaaa gtacaaagat tctgcttcaa cataacaaag       180
     gaacaccagg aaagtgttct cttgcagttg ccacaagggc tttcattcaa tcagcccagt       240
     gtagtgggac cagatggcaa aattgtacct gttacaccat ggttagcccc aattgtttgg       300
     gaaggaactt ttgatcccac attgattgat tcagtctaca aacaacaaaa cgtcactata       360
     gcgactacag tcttcgctct tggaaaatat acagtgtttc tcaaagaatt cctggagtct       420
     gcagagcaga attattttgt tggatttcat gtgcactatt atatcttcac cgatcatcca       480
     gaagaggttc ctgatgtgaa actgggtgaa ggacatcagt tgacggtgat gacagttgat       540
     agttctaaca gatggcagga gatgacattg cggagaatgg agaggctgga gaaactaatt       600
     gagagtcgat tggtgaagga agctgactat gttttcagcc ttgacgttga tacaaagttc       660
     tacgcccgct ggggtgcaga gactttgggt cgtcttgtag gtgtgcttca tcctggttac       720
     tatcaaacac cacgtgagca attcccatat gagcgaaggc ctgagtctca agcgtttatc       780
     ccttattctg agggtgatta ttattatggt ggagctgtgc ttggtggtgc agtgaaagat       840
     gtatatgagg ttgctaagac ctgcagagag cagctggaca ttgatgcagc taaatccatt       900
     gaggcagcat ggcaagagga gtcccatttg aacaaatact ttgtttataa caaacccagt       960
     aaactgcttt cacccgagta cctgtggcag gacttcaaac cgcagacaaa tgaggtcaaa      1020
     atcattcgct tctctcaagt tattaaaaat tatgctgctg ttcgtccaaa cccatagttt      1080
     aatgaaacgt aacagatttt atgctttata ttttaaactg gtgtaatttt aatgtttttg      1140
     tagtctttag caaaaactgt ggccaaatat attgctcata agctatacat caacatctga      1200
     agtgaccatt tgctgctgaa aagtgattta gataagtgta tagtgtttat ttaaaacagt      1260
     tttatgatta agaagattca aaaactatta ttgttatact ataatacctt atcaaaacta      1320
     gcattttcct tcagtaaact tagaacataa gttgtctact aataataaac tctgattaca      1380
     gctcagttac aggtactttt gcatatatga attttaaata gttttacata cagtatattc      1440
     caaaaatcat catgatctat ggttcttact aaatggaaat aacgaatcaa aaatataaac      1500
     ttatcatcag tctgggtttg ggtttcttca agcattgtga cagtatgtga actggtgtga      1560
     tatattatga attattaaat tgatcatttg ctaaaaaaaa aaaaaaaaaa aaaaaaaaa       1619
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