 |
|
EBI DbfetchID BC055559; SV 1; linear; mRNA; STD; VRT; 1777 BP. XX AC BC055559; XX DT 05-AUG-2003 (Rel. 76, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Danio rerio hypothetical protein LOC402826, mRNA (cDNA clone DE IMAGE:3818516), partial cds. XX KW . XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1777 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1777 RG NIH MGC Project RA ; RT ; RL Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000007366; Danio_rerio. DR Ensembl-Tr; ENSDART00000021947; Danio_rerio. DR ImaGenes; IMAGp998F219109Q. DR ImaGenes; IRAKp961E16122Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 122 Row: e Column: 16 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 33416880. XX FH Key Location/Qualifiers FH FT source 1..1777 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="IMAGE:3818516" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene <1..1777 FT /gene="LOC402826" FT CDS <1..1344 FT /codon_start=1 FT /gene="LOC402826" FT /product="LOC402826 protein" FT /db_xref="GOA:Q7SXK5" FT /db_xref="InterPro:IPR005920" FT /db_xref="UniProtKB/Swiss-Prot:Q7SXK5" FT /protein_id="AAH55559.1" FT /translation="KNSALQHRDEVRLTMSANSFKLLVKNATQLVLVCRNGEKYLTRDE FT MQALAVLENASVLIGHDGLIKAVGPADVIETQFEGAKFDNVLDASGMCVLPGLVDAHTH FT PVWAGDRVHEFAMKLAGATYMEVHEAGGGIHFTVAHTRSASEQHLLAALKSRLERMMRA FT GTTLVECKSGYGLELDIEVKMLRVINSARKSLPIGISATYCGAHAVPKGKTMEEATKDI FT VAVQLPKIKHLSASGDLQVDNIDVFCEKGVFDLTSTRCILQAGKDMGLNINFHGDELHP FT MNSAHLGAELGALAISHLEEVTDDGIVAMAKSKTSAVLLPTTAYILRLTPPRARDMLDA FT GVIVALGSDFNPNAYCFSMPMVMHLACVMMKMSMPEALAASTINAAYALNRSQTHGSLE FT VGKQGDLVIINAPRWEHLVYQFGGHQELIRYVIIKGDFVYENDKVLNL" XX SQ Sequence 1777 BP; 540 A; 387 C; 408 G; 442 T; 0 other; aaaaactctg ctctgcaaca ccgcgacgaa gttagactaa caatgtctgc aaacagtttc 60 aaacttctag tcaagaatgc aacacagcta gtgttagttt gtagaaatgg ggaaaagtat 120 cttaccagag atgagatgca ggctctggct gtgctggaga acgccagtgt gctgattgga 180 catgatggac taatcaaagc tgttggacca gcagacgtca ttgaaactca gtttgaagga 240 gcaaagtttg acaatgttct cgacgcttcc ggcatgtgtg ttctcccagg ccttgttgat 300 gcacacacgc atccagtgtg ggctggagat agagtgcatg agtttgccat gaagctggcc 360 ggcgccacat atatggaggt gcatgaagct ggaggaggaa tccatttcac agtggcacac 420 actcgctcgg ccagtgaaca gcatctgttg gctgctttga aaagccgtct ggagcgcatg 480 atgagagctg gaaccacact ggtggagtgt aagagcggat acggactcga gctggacatt 540 gaagtcaaga tgctgagagt gatcaattcg gcaagaaagt cgttgcccat cgggatatca 600 gcaacatact gtggagccca cgcagtgccc aaaggtaaaa ctatggaaga agccactaag 660 gacattgttg cagtgcagct gcccaaaata aaacatctaa gcgcttcagg tgatttgcaa 720 gtggacaaca ttgatgtatt ttgtgagaaa ggtgtgttcg atctcacctc cactcgttgc 780 atactccagg ccggcaaaga catgggcctc aacatcaact ttcatggcga tgaactccat 840 cctatgaact cggcacatct aggtgcagaa cttggtgctt tagcgatcag ccatttagag 900 gaagtgacag atgatgggat tgttgccatg gcgaaatcga aaacatcagc ggtcctcctt 960 cccaccactg catatatatt acgacttact ccaccacgtg cgagagatat gcttgatgct 1020 ggagtcatag tggctctggg cagcgacttc aaccccaatg cctactgctt ttcaatgcct 1080 atggtgatgc acttggcctg tgtgatgatg aaaatgtcta tgccagaagc tctggccgca 1140 agcactataa atgcagccta cgctctcaac cgctcacaaa cacatggctc gcttgaagtt 1200 gggaaacagg gagaccttgt gatcatcaat gcaccacggt gggaacatct ggtctaccag 1260 ttcgggggtc atcaagagct catcagatat gtcataatca aaggcgattt tgtttatgaa 1320 aatgataaag ttttgaatct ttgaacatcc cacagtaaat aaacacaaga tggatcgtgt 1380 ggtaaaactg tattattatg ataataaaaa ggcttggtac catattcaaa attttaaaaa 1440 tggtttgttg ataaaataaa taattccata catatattca taagttaaat caatttacaa 1500 acagtttgaa atcatacaaa catgctctgt accagtctgc cctttaatct ccagcatgct 1560 tctgtcatcg taatggaaat gcccggttca gcaccagctc caacctctct cctccgagtg 1620 cacatgcatc taacacacac accagcctct gattggtcag ctgatttgca gtggcgatca 1680 agtccgcttt gggagaagag aaactattat taaaacttta ccgattttag cactcaaaga 1740 aaataaaatg aaattaaaac aaaaaaaaaa aaaaaaa 1777 // |
|