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EBI DbfetchID BC055554; SV 1; linear; mRNA; STD; VRT; 1725 BP. XX AC BC055554; XX DT 05-AUG-2003 (Rel. 76, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 15) XX DE Danio rerio asparagine-linked glycosylation 1 homolog (yeast, DE beta-1,4-mannosyltransferase), mRNA (cDNA clone MGC:66221 IMAGE:2639519), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1725 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1725 RG NIH MGC Project RA ; RT ; RL Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000054963; Danio_rerio. DR Ensembl-Tr; ENSDART00000077235; Danio_rerio. DR ImaGenes; IMAGp998A246586Q. DR ImaGenes; IRAKp961D18122Q. DR ImaGenes; IRBOp991C049D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 122 Row: d Column: 18. XX FH Key Location/Qualifiers FH FT source 1..1725 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="MGC:66221 IMAGE:2639519" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1725 FT /gene="alg1" FT /note="synonyms: fi34b12, zgc:66221, wu:fi34b12" FT CDS 18..1484 FT /codon_start=1 FT /gene="alg1" FT /product="asparagine-linked glycosylation 1 homolog (yeast, FT beta-1,4-mannosyltransferase)" FT /db_xref="GOA:Q7SXK9" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7SXK9" FT /db_xref="ZFIN:ZDB-GENE-030131-6093" FT /protein_id="AAH55554.1" FT /translation="MADANAAVAVVTVSLVLLGLLSGLSVLWSLLPVAVVVLIFVLASG FT LKGRDELAHLNVCVLVLGDIGRSPRMQYHALSLSKHGYNVTIIGFLGTKPHQDILEDDR FT IDILPISELKGLTVGPRIFRYISKVTLQSFQLLYVLMTIEDQGYILMQNPPGLPAIAVT FT WMASRIRGNQFIIDWHNYGYTIMALSHGENHLIVRLAKWYEKIFGCLSDHNLCVTSAMR FT EDLCKNWNIEATTLYDKPPSIFRETPLKLQHELFVRMGSAYLPFRPSSAVTKEYMELTA FT FTERNTQTGAVTRSAGRPALLISSTSWTEDEDFSVLLQALEEYEKFVETENRLPSLVCV FT ITGKGPQKEYYKKLIDSREFHHVKICTPWLEAEDYPVLLGSADLGVCLHKSSSGLDLPM FT KVVDMFGCCLPVCAIHFECLHELVKHEENGLIFKDSSELAEQLKLLFLDFPGDQGKLGI FT FRKNLQESRQQRWDENWDQNVLPLIKEHCD" XX SQ Sequence 1725 BP; 494 A; 359 C; 409 G; 463 T; 0 other; ataatcagga aaacacaatg gcggatgcca atgcggcagt agctgtagtg acagtttcat 60 tggttctttt aggactttta tcggggctaa gcgttttgtg gtctcttctg ccggtcgctg 120 tagtcgtgct tatttttgta ctagccagtg gactaaaggg acgagatgaa cttgcccatt 180 tgaacgtttg cgtgctggtg ctgggagata tcgggcgcag tcctcgcatg cagtatcatg 240 cgctctctct cagcaaacat ggatacaatg tcaccataat tggctttctc ggaactaaac 300 ctcatcaaga cattcttgaa gatgacagaa tagacattct tcccatttca gaactaaagg 360 ggctaacagt tggccccaga attttcaggt atatttcaaa ggtgacactc cagtctttcc 420 agctgctcta tgtcttgatg acgattgaag accaaggcta tattcttatg cagaaccctc 480 ctggactgcc ggctatagcg gtgacatgga tggcgagccg tatcagggga aaccagttta 540 tcatagactg gcacaactat ggatacacca taatggctct gagtcatggg gaaaatcatt 600 taattgttag gttggcaaaa tggtacgaga agatatttgg atgtctctcg gatcacaact 660 tgtgtgtcac tagtgcaatg agggaagatc tttgcaagaa ctggaatatt gaggcaacca 720 cgttatatga caagccgccc tcaatatttc gagaaacacc tttgaaactt cagcatgagc 780 tgtttgtcag aatgggcagt gcttatctac catttaggcc tagttctgct gtcactaagg 840 agtacatgga actgacagcc ttcacagagc gtaacactca gacaggagcc gtgacacgct 900 ctgctggacg acctgctctg ctgatcagca gcaccagctg gactgaggat gaagacttct 960 cagttctgtt acaagcactt gaagagtatg agaaatttgt tgagaccgag aacagactcc 1020 catcgctggt ttgtgtgatt acagggaaag gtcctcagaa ggagtattac aagaaactga 1080 ttgactctag agaatttcat catgtcaaga tctgcactcc atggctggaa gctgaagatt 1140 atcctgtttt acttggttct gctgatcttg gggtctgctt gcacaaatcc tccagtggtc 1200 ttgaccttcc aatgaaagtg gtcgacatgt ttggatgttg cctgccagtc tgtgccatac 1260 actttgagtg cttgcatgag ttggtgaaac atgaggaaaa tgggctcatt ttcaaagact 1320 ccagtgagct ggctgaacaa ttaaagcttc tgtttttaga tttccctggt gatcagggga 1380 aactgggcat cttcaggaag aatctacagg aaagcaggca gcagcgatgg gatgagaact 1440 gggaccaaaa cgttctgcca cttattaaag agcactgtga ctgaccgtca aaaccgatgg 1500 gattctgtag catgctccca aatcctttga caaacattca ctagaaagtt actgtcaggt 1560 attcgcacag ggtacatttt taagctaact gtccccacgt cgggacaatc agcattccag 1620 caacgccaat gggaaagact tgaataagag aataataagc acactgtcac tgtaaatatt 1680 atgtaaataa atactttatt acaaaggaaa aaaaaaaaaa aaaaa 1725 // |
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