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EBI DbfetchID BC055547; SV 1; linear; mRNA; STD; VRT; 1872 BP. XX AC BC055547; XX DT 05-AUG-2003 (Rel. 76, Created) DT 20-JUN-2006 (Rel. 88, Last updated, Version 5) XX DE Danio rerio ER degradation enhancer, mannosidase alpha-like 2, mRNA (cDNA DE clone IMAGE:5915973), partial cds. XX KW . XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1872 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1872 RG NIH MGC Project RA ; RT ; RL Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000006602; Danio_rerio. DR Ensembl-Gn; ENSDARG00000027853; Danio_rerio. DR Ensembl-Gn; ENSDARG00000028448; Danio_rerio. DR Ensembl-Gn; ENSDARG00000029474; Danio_rerio. DR Ensembl-Gn; ENSDARG00000030583; Danio_rerio. DR Ensembl-Gn; ENSDARG00000035023; Danio_rerio. DR Ensembl-Gn; ENSDARG00000040255; Danio_rerio. DR Ensembl-Tr; ENSDART00000033774; Danio_rerio. DR Ensembl-Tr; ENSDART00000033947; Danio_rerio. DR Ensembl-Tr; ENSDART00000038099; Danio_rerio. DR Ensembl-Tr; ENSDART00000041417; Danio_rerio. DR Ensembl-Tr; ENSDART00000045071; Danio_rerio. DR Ensembl-Tr; ENSDART00000058890; Danio_rerio. DR Ensembl-Tr; ENSDART00000059560; Danio_rerio. DR ImaGenes; IMAGp998H2213160Q. DR ImaGenes; IRAKp961O22122Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 122 Row: o Column: 22. XX FH Key Location/Qualifiers FH FT source 1..1872 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="Sugano SJD adult male" FT /clone="IMAGE:5915973" FT /tissue_type="Whole body, adult male" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene <1..1872 FT /gene="edem2" FT CDS <1..1720 FT /codon_start=2 FT /gene="edem2" FT /product="edem2 protein" FT /db_xref="GOA:Q7SXL5" FT /db_xref="HSSP:1DL2" FT /db_xref="InterPro:IPR001382" FT /db_xref="UniProtKB/TrEMBL:Q7SXL5" FT /db_xref="ZFIN:ZDB-GENE-060519-1" FT /protein_id="AAH55547.1" FT /translation="LYYLPLFTSRYFMLTFLFSAIFCAAYLSPIISHVKGRDFTEQEMS FT HYRDRVKSMFYHAYNSYLDNAYPYDELRPLTCDGQDTWGSFSLTLIDALDTLLILGNHT FT EFQRVATLLQDTVDFDIDVNASVFETNIRVVGGLLSAHLLSKRAGMKVEEGWPCSGPLL FT RMAEDAARKLLPAFQTPTGMPYGTVNLLRGVNPGETPVTCTAGVGTFILEFSTLSRLTG FT DPVFENVARKALRALWRTRSDIGLVGNHIDVITSKWVAQDAGIGAGVDSYFEYLVRGAI FT MLQDEELLTMFYEFDKSIKNYTKFDDWYLWVQMHKGTVSMPVFQSLEAFWPGMQSLIGD FT ISSATKSFHNYYSVWRQFGGLPEFYSIPQGYTVDKREGYPLRPELIESAMYLYKATGDP FT SFIQLGRDAVESIDRISRVNCGFATVKDVRDHKLDNRMESFFLAETIKYLYLLFDPDNF FT LHNTGTEFELGGLRGDCILSAGGYVFNTEAHPLDPAALHCCSREQQDRREIQDILLSFS FT QPHTEEPSRDQSAGGSPESIALKPGEQRKAPVLSCPTQPFSAKLAVMGQVFSDNS" XX SQ Sequence 1872 BP; 459 A; 466 C; 479 G; 468 T; 0 other; attgtattat ttacctctgt tcacatctcg ttacttcatg cttactttcc ttttctccgc 60 cattttctgc gccgcgtacc tgtctccgat catcagtcat gttaaaggca gagactttac 120 tgagcaggaa atgtctcatt acagggacag agtaaagtcc atgttttatc atgcatataa 180 cagctatctg gacaatgcgt atccatatga tgagctgagg ccgctgacct gtgatggaca 240 ggacacctgg ggcagtttct ccctcacact catagatgct ctggacacat tgctgattct 300 aggaaaccac acagagtttc agcgtgtggc cactctgctt caggacactg ttgacttcga 360 catcgacgtc aatgcgtctg tgtttgagac aaatatacga gtggtcggtg ggcttctctc 420 ggctcatctg ctctccaagc gtgctgggat gaaggtggag gagggctggc cctgctctgg 480 accccttctg cgcatggcag aggacgccgc tcgaaaactg cttcctgctt tccagacgcc 540 cacagggatg ccgtatggaa cagtaaacct gctgcgggga gtgaaccccg gcgaaacccc 600 tgtcacctgc accgccggag tgggcacctt catcctagag ttttccaccc tcagtcgact 660 caccggtgac cctgtgttcg agaatgtggc ccgcaaagct ctcagggcct tatggagaac 720 gcgctctgac atcggcctgg tgggcaatca catagatgtc ataacctcga agtgggtcgc 780 tcaggacgca gggattggag caggagttga ttcatatttc gaatatcttg taaggggtgc 840 catcatgctt caagatgagg agctgttgac aatgttctat gaatttgata agtccataaa 900 gaactacact aagtttgatg attggtatct gtgggtgcag atgcataaag gaacagtatc 960 aatgcctgtg tttcagtctc tggaggcgtt ctggcctgga atgcagagtt taataggtga 1020 tatttccagt gctacaaaga gcttccacaa ctactacagc gtgtggcggc agtttggagg 1080 tcttccagaa ttctacagca ttcctcaagg ttacacagtg gacaagcgag agggatatcc 1140 actgcggcca gagttaatag agagcgcaat gtatctgtat aaggccactg gggacccttc 1200 attcatccag cttggccgag atgcagtgga gtccattgac agaatcagcc gggtcaactg 1260 tggttttgcc actgtgaagg atgtaaggga ccacaagttg gacaaccgca tggaatcctt 1320 cttcctagcc gagaccatta aatacctcta cctcctcttc gatcctgaca acttccttca 1380 caacacgggc acagagtttg agctgggggg tctgcggggt gactgtattc tcagcgcggg 1440 gggctatgtg ttcaacacag aggctcatcc gctggacccc gccgcactcc actgctgcag 1500 ccgagagcag caggaccgca gggagattca ggacatcctc ctcagcttct cgcagccgca 1560 tacagaggag ccatcacggg accagagcgc aggtggctct ccggagagca ttgcactgaa 1620 gccgggagag cagaggaaag cgccggtgct ctcctgccct acgcagccct tcagtgccaa 1680 actggccgtc atgggtcagg tcttctctga caactcttga acagactgtc ctaccgtgcg 1740 taaagctgta gatttacctt tgtaaattaa ctttggagag attaaatgtt ttctaaatat 1800 gtgtggagtt ttttccactc cttttattaa aacaattgtt ttgacgaaaa aaaaaaaaaa 1860 aaaaaaaaaa aa 1872 // |
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