EBI Dbfetch

ID   BC055191; SV 1; linear; mRNA; STD; VRT; 1859 BP.
XX
AC   BC055191;
XX
DT   16-JUL-2003 (Rel. 76, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 10)
XX
DE   Danio rerio zgc:63658, mRNA (cDNA clone MGC:63658 IMAGE:5612403), complete
DE   cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1859
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1859
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (14-JUL-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   Ensembl-Gn; ENSDARG00000022744; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000028357; Danio_rerio.
DR   ImaGenes; IMAGp998P0412421Q.
DR   ImaGenes; IRAKp961O07118Q.
DR   ImaGenes; IRBOp991D0946D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Sumio Sugano
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 118 Row: o Column: 7
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 32766373.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1859
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="Sugano SJD adult male"
FT                   /clone="MGC:63658 IMAGE:5612403"
FT                   /tissue_type="Whole body, adult male"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1859
FT                   /gene="zgc:63658"
FT                   /note="synonym: MGC63658"
FT   CDS             87..1697
FT                   /codon_start=1
FT                   /gene="zgc:63658"
FT                   /product="zgc:63658"
FT                   /db_xref="GOA:Q7SXZ1"
FT                   /db_xref="InterPro:IPR005599"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7SXZ1"
FT                   /db_xref="ZFIN:ZDB-GENE-040426-1216"
FT                   /protein_id="AAH55191.1"
FT                   /translation="MEKIRERFKQSKSSNESVRLRKRSSILYSTDDRKLQTLKIFGINI
FT                   TVFIVLVRLLNCVLVQTSFVPDEFWQSLEISHRMVFGYGYETWEWKEGIRGYSYPLLFA
FT                   LMYKLLQLISYDTVYLLVFVPRVFQALLAAYADVKLYKLILQWETPDVAKWTCFCQLCS
FT                   WFAWFCCSRTLTNTTETALTTLALCFYPLPGSKTHSSWKYLTLVSLAVVIRPTALIVWF
FT                   PLIFYHFCTDQDKLKLITHRYFPIGVLALGVSTLIDSFFYGKWIFVQWNFLKFNVLHNV
FT                   GEFYGSHPWHWYWTQGLPVVIGPHLPLVLHGCLLSTRKHTILLLTIIWTTAVYSLLAHK
FT                   EFRFIYPVLPFCMIFCGLSLAKLQAWRKAAAGALLLFNLCPALYTGLVHQRGALDVMHV
FT                   LQPLCVSSQSPNPPELLFLMPCHSTPLYSHLHCPLKLRFLECPPDLTGRQDYMDEADVF
FT                   FSDPLHWLNTSFPLRSTLPSHLVLFDSLQKEISSFLEENSFAKQAEIFHTHFPEGRVGK
FT                   NILIYSRRSEMKINEGFIL"
XX
SQ   Sequence 1859 BP; 454 A; 449 C; 405 G; 551 T; 0 other;
     cccaaaaact gttcgcaaac gcgctagaaa attaacattc agtctttgag ttaaaatgct        60
     gaactttaaa aggttcatgc tgagtcatgg aaaagattcg agagcggttt aaacagagca       120
     agtcttcaaa tgaatcagtg aggctgcgga agaggagctc aattctgtac agcactgatg       180
     acagaaaact gcaaacactc aaaatctttg gcatcaacat caccgttttc atcgtcctcg       240
     tccgcctgct caactgtgtt ctggtgcaga ccagctttgt cccggatgag ttctggcagt       300
     cgctggaaat ctcccatcga atggtcttcg gttatggcta cgagacctgg gaatggaagg       360
     aaggcattcg gggatattcg tatcctcttc tgttcgctct gatgtataaa ctcctgcagc       420
     tcatcagtta tgacaccgtt tatttgttgg tgtttgtgcc gcgtgttttc caggcgcttc       480
     tggctgcata tgctgatgtg aaactgtata aactaatcct ccagtgggaa acgccagacg       540
     tggccaaatg gacatgtttc tgtcagctgt gttcgtggtt cgcctggttc tgctgcagtc       600
     ggacgctgac aaacactaca gagacagctc tgaccacact ggcgctgtgc ttttatcctt       660
     tacctggatc caaaacacac agcagctgga agtatttgac tctggtttct ttggctgtgg       720
     tcattcgtcc cacggctctg atcgtctggt ttcctctgat cttctatcat ttctgcacag       780
     atcaggacaa actgaagctc atcacacaca gatactttcc tattggggtt cttgcactgg       840
     gcgtctccac actgatagac tcttttttct atggaaagtg gatcttcgtg cagtggaact       900
     tcctaaagtt taacgttctg cacaatgtgg gtgagtttta cggctctcac ccatggcact       960
     ggtactggac tcagggtctg ccggtggtca tcggcccaca cctcccgctc gtcctgcacg      1020
     gatgcttact gtccaccaga aaacacacca tcctactgct caccatcatc tggaccactg      1080
     ccgtatacag tttgcttgca cacaaggagt tccggttcat ttatcctgtg ttgccgttct      1140
     gtatgatatt ttgcggtcta tcattagcga agctgcaggc gtggaggaaa gctgctgctg      1200
     gtgccctgct gctcttcaat ctgtgtcctg ctttatatac gggtttagtt caccagcgtg      1260
     gagctctgga tgtcatgcat gtcctgcagc cgctgtgtgt ttctagtcaa tctccaaacc      1320
     cacctgagct gctgttcctc atgccatgcc actccacacc tctctacagt cacctccact      1380
     gtcctctaaa gctgcgcttc ctggagtgtc caccggatct gactggacgc caggattata      1440
     tggatgaagc tgatgttttc ttctcagatc cgcttcactg gctcaacaca tccttccctt      1500
     tgcggtcaac actgccttca catttagtgc tgtttgactc cctgcagaag gagatttctt      1560
     cattcctgga ggaaaacagc tttgccaaac aagctgaaat attccacact cactttcctg      1620
     aggggcgagt gggaaagaat atattaatat acagcaggag atctgaaatg aagattaatg      1680
     aaggtttcat cctttaaaga tgtactgtat taataatgct ttgagtttct gtctcgtttt      1740
     tagtctaaat atccttaaat caagaagcat tttctagaca tgtgcaaact attgttttgt      1800
     tttcataaat aatatgtgga aataaagatt ttctttaaaa caaaaaaaaa aaaaaaaaa       1859
//