EBI Dbfetch

ID   BC055155; SV 1; linear; mRNA; STD; VRT; 1985 BP.
XX
AC   BC055155;
XX
DT   16-JUL-2003 (Rel. 76, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 11)
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DE   Danio rerio aldehyde dehydrogenase 4 family, member A1, mRNA (cDNA clone
DE   MGC:63592 IMAGE:5412192), complete cds.
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KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1985
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1985
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (14-JUL-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000052315; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000042829; Danio_rerio.
DR   ImaGenes; IMAGp998J0112051Q.
DR   ImaGenes; IRAKp961L12118Q.
DR   ImaGenes; IRBOp991E0726D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Sumio Sugano
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 118 Row: l Column: 12
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 32766334.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1985
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="Sugano SJD adult male"
FT                   /clone="MGC:63592 IMAGE:5412192"
FT                   /tissue_type="Whole body, adult male"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1985
FT                   /gene="aldh4a1"
FT                   /note="synonym: zgc:63592"
FT   CDS             108..1778
FT                   /codon_start=1
FT                   /gene="aldh4a1"
FT                   /product="aldehyde dehydrogenase 4 family, member A1"
FT                   /db_xref="GOA:Q7SY23"
FT                   /db_xref="InterPro:IPR005931"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7SY23"
FT                   /db_xref="ZFIN:ZDB-GENE-040426-1179"
FT                   /protein_id="AAH55155.1"
FT                   /translation="MLRARSAVSQSWKGFKTFSCVAVEVKNEPVLEFKEGSKERAELEE
FT                   ALRNLKGKTEEIPCVIGNEEVWTKDIRFQLSPFNHSHQVAKFCYADKDLLNKAIEASVA
FT                   ARREWDLKPVSDRAQIFFKAADIISGPKRAEVLAKTMIGQGKTVVQAEIDAAPELIDFF
FT                   RFNAKHAIELEDQQPLDSDGSTNTMLYRGLEGFVAAVAPFNFTAIGGNLAGTPALMGNV
FT                   VLWKPSDTAMSASYAVYKILRESGLPPNIIQFVPADGPVFGDTVTSSEHLAGINFTGSV
FT                   PTFKRLWKQVAQNLDIYKNFPRVAGECGGKNFHFVHKSADVRSVVTGTIRSAFEYGGQK
FT                   CSACSRMYVPDSLWPQIRQGLLDVYKQIKVGDPVEDFSTFFSAVIDDKSFSRIKGWLEH
FT                   ARSSPHLKIIAGGNCDDKKGYFVEPTIIETTDPQEKIMNEEIFGPVLTVYVYPENDYKK
FT                   VLHLIDNTSPYALTGAIFPQDKSVIEEAGKALRNAAGNYYINDKSTGSIVAQQPFGGAR
FT                   ASGTNDKPGGPHYVLRWTSPQVVKQTHVPLTEWKYPYMS"
XX
SQ   Sequence 1985 BP; 574 A; 493 C; 475 G; 443 T; 0 other;
     agtatcaaaa ttccacctca gcgccgtggt tcctcaacag gaggatattt ctgaattgta        60
     tatatataaa taatatctct gtgcttccct gtacggccaa atcaacgatg ctgcgagcga       120
     ggtctgccgt cagtcagtcg tggaaagggt tcaagacttt ctcgtgtgta gcggtggagg       180
     tgaagaatga gcccgttctg gagtttaaag agggcagtaa agagagagca gaactggagg       240
     aggcgttacg aaacctgaag ggaaaaacag aagaaattcc atgtgtgatc ggaaatgaag       300
     aagtgtggac caaagacatc cgattccagc tgtctccctt caaccattct caccaagttg       360
     caaagttctg ctatgctgac aaggatcttc taaataaagc cattgaggct tcagtcgctg       420
     ctcggaggga atgggatctt aaaccggtct cagatcgagc ccagatcttc ttcaaagctg       480
     ccgacatcat cagtgggccc aagagagcag aagtactggc caagactatg atcggacagg       540
     gtaagactgt ggttcaggcg gagatcgacg cagctccaga actcattgac ttcttcaggt       600
     ttaatgccaa acatgcaatt gagcttgaag accagcagcc gctggacagt gacggcagca       660
     caaacaccat gctgtaccgc ggcctagagg gatttgttgc tgctgttgct ccatttaact       720
     tcacagcgat tggcggaaac ctggccggca ctcctgctct tatgggtaac gttgtgctgt       780
     ggaaacccag tgataccgcc atgtctgcca gttatgcagt ctataagatc ctgagagagt       840
     ctggattgcc accgaacatc attcagtttg tcccggcaga tgggccagtg tttggagaca       900
     cagttacgtc ctctgagcac ctcgccggca tcaacttcac cggcagcgtc ccaacgttta       960
     agcggttgtg gaagcaggtc gcccagaatc tggacatcta caagaatttc cctcgcgttg      1020
     ctggagagtg tggtgggaag aacttccact ttgtgcacaa gtctgcagac gtccgcagtg      1080
     tggtgaccgg caccatccgc tccgcgtttg agtacggagg acagaaatgt tctgcctgct      1140
     ctcgtatgta cgtcccagac tctctctggc ctcagatcag acagggcctc ctggacgtct      1200
     acaaacagat caaagttgga gacccagtgg aagatttcag cactttcttc tcagcggtga      1260
     ttgatgacaa gtctttctcc aggattaaag gctggcttga acacgccaga tcttctccac      1320
     atctgaagat catcgctgga ggaaactgcg acgacaagaa gggctatttc gtggagccca      1380
     caataatcga gaccaccgac ccacaggaga agatcatgaa tgaggagatc ttcggacccg      1440
     tcctgacagt ctacgtttac cctgaaaacg actacaagaa agtcctgcac ttaatagaca      1500
     acacttctcc atacgcccta acaggagcca tcttccccca agacaaatct gttatagagg      1560
     aggccggaaa agctttaaga aatgctgcag gaaactatta tatcaatgat aaatcgacag      1620
     gatcaatcgt ggcccagcag ccttttggtg gcgccagagc gtcaggcacc aacgacaaac      1680
     ccggcggccc ccattacgtc ctacgctgga catcccctca ggtggtcaag cagacacacg      1740
     tcccactcac agaatggaaa tatccttaca tgagctaaaa gaccgcttca tttctctaaa      1800
     atccttccta aaagactctt cttaccgtcc caaaaccgca gacaaagtgt ggtaatgatg      1860
     aagagcaaca gtaaaaagca gaccagactg aatgtatccc cgaagatttc tctgcaaaca      1920
     tcactggatt attaatacaa gctattaatt cagcaaagaa aaaaaaaaaa aaaaaaaaaa      1980
     aaaaa                                                                  1985
//