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EBI DbfetchID BC054942; SV 1; linear; mRNA; STD; VRT; 2060 BP. XX AC BC054942; XX DT 16-JUL-2003 (Rel. 76, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Danio rerio zgc:63792, mRNA (cDNA clone MGC:63792 IMAGE:3814923), complete DE cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2060 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2060 RG NIH MGC Project RA ; RT ; RL Submitted (08-JUL-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000003920; Danio_rerio. DR Ensembl-Gn; ENSDARG00000014976; Danio_rerio. DR Ensembl-Gn; ENSDARG00000027768; Danio_rerio. DR Ensembl-Gn; ENSDARG00000042232; Danio_rerio. DR Ensembl-Gn; ENSDARG00000071233; Danio_rerio. DR Ensembl-Gn; ENSDARG00000075433; Danio_rerio. DR Ensembl-Gn; ENSDARG00000075759; Danio_rerio. DR Ensembl-Gn; ENSDARG00000075948; Danio_rerio. DR Ensembl-Gn; ENSDARG00000078042; Danio_rerio. DR Ensembl-Tr; ENSDART00000006099; Danio_rerio. DR Ensembl-Tr; ENSDART00000012540; Danio_rerio. DR Ensembl-Tr; ENSDART00000023834; Danio_rerio. DR Ensembl-Tr; ENSDART00000054594; Danio_rerio. DR Ensembl-Tr; ENSDART00000061912; Danio_rerio. DR Ensembl-Tr; ENSDART00000087105; Danio_rerio. DR Ensembl-Tr; ENSDART00000105179; Danio_rerio. DR Ensembl-Tr; ENSDART00000108999; Danio_rerio. DR Ensembl-Tr; ENSDART00000111929; Danio_rerio. DR ImaGenes; IMAGp998A049100Q. DR ImaGenes; IRAKp961G15118Q. DR ImaGenes; IRBOp991C0325D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 118 Row: g Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 32766595. XX FH Key Location/Qualifiers FH FT source 1..2060 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="MGC:63792 IMAGE:3814923" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2060 FT /gene="zgc:63792" FT /note="synonyms: MGC63792, fa55g10, CHIA, wu:fa55g10" FT CDS 172..1599 FT /codon_start=1 FT /gene="zgc:63792" FT /product="zgc:63792" FT /db_xref="GOA:Q7SYA8" FT /db_xref="HSSP:1GUV" FT /db_xref="InterPro:IPR001223" FT /db_xref="InterPro:IPR001579" FT /db_xref="InterPro:IPR002557" FT /db_xref="InterPro:IPR011583" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:Q7SYA8" FT /db_xref="ZFIN:ZDB-GENE-030131-9279" FT /protein_id="AAH54942.1" FT /translation="MTGLIFLAGISLALCQCGLASQLACYFANWSQYRPDVGKYMPSNV FT DPHLCTHLIYAFSVINIKNKLATSEWNDETLYQSFNALKQSNPNLKTLLAVGTLNLGST FT QFSRMVSTPQKRQTFIESSIKFLRTHGFDGLDLDWEYPGSGESPPEDKHRFTLLCKELL FT KAYQAESKATRRPRLMLTAAVAARKGIIDAGYEIAEVSKYLDFINIMTYDFHGSWENVT FT GHNSPLYRDSRDTGDQIYYNTDFAMTYWRDQGAPVEKLRMGFAAYGRTFCLSSAVNGLG FT APVSGPASAGTYTREAGYWSYYEICTFLQRASVEQIADQKVPYATEGLNWVGFDDQKSY FT ETKVDYLKEKGFGGAFVWSLDLDDFSGQFCGQGKYPLIGHLHTLLNISNTEFRHLPKTI FT KSGGASATGNIVTTTPIVKTVTSGSDFCAGGLVGIFANPDNPMTFIQCANGRTFIQNCP FT AKTVFDPDCSCCNWPKN" XX SQ Sequence 2060 BP; 603 A; 424 C; 458 G; 575 T; 0 other; gtcttcactt gtagacaaca gggatctaac agtgagggaa aaacaaagga gactggagac 60 ctaagcgaca gaacaggtct tggttaatca tcacgtatag gagtaaattt tgtgtgttgg 120 ggttaaaagc tcatacggct tactcctgac tgatataaac atcatttgga gatgaccgga 180 ttaatttttc tagctggcat ttccttggca ttgtgccaat gtggattggc gtcccaactt 240 gcatgttact tcgccaactg gtctcagtac agacctgatg ttggcaagta catgccatct 300 aatgtggatc cacatctttg cactcattta atttatgcct tctccgttat taatattaaa 360 aataaattgg caacctccga atggaatgat gagactcttt accagtcttt caatgcgcta 420 aaacaaagca accccaacct gaaaactctg ttggctgtcg gcacattgaa cttgggctca 480 actcaattta gcagaatggt gtccacgcca caaaagagac agacatttat tgagtccagt 540 atcaaattcc tgaggaccca tggattcgat ggtctggatc tggactggga gtatcctggt 600 tctggtgaaa gtcctccaga agacaagcat agattcactt tgctctgtaa ggagctttta 660 aaagcttacc aggcagagag taaagctact agacgcccca gactcatgct cactgctgca 720 gtggctgcta ggaaaggaat cattgatgct ggttatgaaa ttgcagaagt tagcaagtat 780 ttggatttca tcaatatcat gacctatgat ttccacggct catgggagaa cgttactgga 840 cacaacagtc ctctgtacag agactccaga gacacaggag accaaatcta ctacaatact 900 gactttgcaa tgacctactg gagagatcag ggtgctcctg tggagaagct gaggatgggc 960 tttgcagcat acggaaggac gttttgcttg tcatctgcag tcaatggact tggagctcca 1020 gttagtggtc cagcatcagc tggaacatac accagagaag ctggatactg gtcctattat 1080 gagatctgta ctttcctcca aagagccagt gtggaacaaa ttgctgatca gaaagttcct 1140 tatgccaccg aaggactgaa ctgggtggga tttgatgacc agaaaagcta cgagacaaag 1200 gtggactacc tgaaggagaa aggctttgga ggagcttttg tctggtctct ggatcttgat 1260 gactttagtg gtcagttctg tgggcagggc aaataccctc ttattggaca cctccacacg 1320 ctgcttaata tcagcaacac tgagttcaga caccttccaa aaacaatcaa gtctggtggg 1380 gcatcggcaa caggaaacat tgttaccaca acacctattg taaagactgt tacatcagga 1440 tcagacttct gtgcgggcgg attagtgggc atctttgcaa atccagataa tcccatgaca 1500 ttcattcagt gtgccaatgg caggaccttc atacagaatt gtcctgcaaa gactgtcttt 1560 gatcccgact gctcatgctg taactggcca aagaattaac atctgttaat cccacagttg 1620 gacgcgaaga ctttcaaatt atacgttaag tccaattaca caaaggggtt tcatgtaaca 1680 gatttcatgt gtaaatctgt gtgccacaag ttttaaccca caaacatctt tgtattttga 1740 cttctgttgt accaaagagt ttttctacac tccttgtaca aacttacctc tatgtgcatc 1800 tgttattact gtagcttgtg tgcattctag accaggggtg ttggagttta tagtttcagc 1860 acttacatgt ggctttcaaa caagcctgat taacttttaa tttgatcagg agtagttagc 1920 taaggtttaa gttgtgcagg gctgtagtac aactggtttc tagagagtca aggaaaaatt 1980 ctcttgtgaa tcaatgcccc ttatgcataa ttgcaacttt taataaagaa attgcagaaa 2040 gtgaaaaaaa aaaaaaaaaa 2060 // |
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