 |
|
EBI DbfetchID BC054650; SV 1; linear; mRNA; STD; VRT; 1669 BP. XX AC BC054650; XX DT 05-JUL-2003 (Rel. 76, Created) DT 16-JUL-2006 (Rel. 88, Last updated, Version 8) XX DE Danio rerio zgc:66117, mRNA (cDNA clone MGC:66117 IMAGE:2600194), complete DE cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1669 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1669 RG NIH MGC Project RA ; RT ; RL Submitted (01-JUL-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000058597; Danio_rerio. DR Ensembl-Tr; ENSDART00000081484; Danio_rerio. DR ImaGenes; IMAGp998K116483Q. DR ImaGenes; IRAKp961A11122Q. DR ImaGenes; IRBOp991H1028D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 122 Row: a Column: 11 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 32451933. XX FH Key Location/Qualifiers FH FT source 1..1669 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="MGC:66117 IMAGE:2600194" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1669 FT /gene="zgc:66117" FT /note="synonyms: Nt5c3, fb30h07, wu:fb30h07" FT CDS 64..1026 FT /codon_start=1 FT /gene="zgc:66117" FT /product="zgc:66117" FT /db_xref="GOA:Q7SYN4" FT /db_xref="InterPro:IPR018012" FT /db_xref="UniProtKB/Swiss-Prot:Q7SYN4" FT /db_xref="ZFIN:ZDB-GENE-030131-439" FT /protein_id="AAH54650.1" FT /translation="MASATVCALFGGVVFAQYIFTKKQRAGKKTKIIEMMPEFEKNTVH FT IRDPERVEQIICGLIKGGASKLQIITDFDMTLSRFAVNGKRCPSCHNIIDNSKLVTDDC FT RKKLVHLKETYYPIEIDPHLTMEEKYPFMVEWYFKSHTLLVEQRLEKDKLPEAVRESDV FT SLKEGYEQFFDRLHQHSVPVFIFSAGLGDVLEEIIRQAGVYHPNVKVVSNFMDFDDNGV FT LKGFKGELIHVYNKHDGALRNTEYFKQLKDNGNIILLGDSLGDLTMADGVPNVENILKI FT GYLNDKVEELLEKYMDSYNIVLARDETLEVPNSILQKIL" XX SQ Sequence 1669 BP; 496 A; 339 C; 390 G; 444 T; 0 other; aaccacgagt ctttgggttc cggggggagg ccggacagga acgcggtggt taaagtcggc 60 gcgatggcga gcgccacagt gtgcgcgctt ttcggcggtg tggtgttcgc tcagtacatt 120 ttcaccaaaa aacagagagc ggggaagaaa accaagataa tcgaaatgat gccagagttc 180 gagaaaaaca ccgttcacat cagagaccct gagagggtgg agcagattat ctgtggtctc 240 attaaaggtg gagcttccaa actgcagatc atcacagatt tcgatatgac gttaagcaga 300 tttgccgtca atggaaaacg ttgtccatca tgtcataata tcattgacaa ctcaaaactg 360 gtgacagacg attgtagaaa gaagctggtc cacctaaagg aaacatatta tcccatagag 420 atagaccctc atctgacaat ggaggagaaa tatccattta tggtggagtg gtattttaag 480 tctcacacat tattggttga acagagattg gaaaaagaca aacttccaga ggccgtcaga 540 gagtcggacg tcagtctaaa ggaaggttac gagcagttct ttgaccggct gcatcagcac 600 agcgttcccg tgttcatctt ttcggcgggt ctgggggatg tgctggagga gatcatcaga 660 caggctggcg tctaccaccc caacgtcaaa gtcgtgtcca acttcatgga ctttgatgac 720 aatggtgttc tgaaaggctt taaaggagag ctgatccatg tttacaacaa gcatgacggt 780 gctttgagga acacggagta cttcaaacag ctgaaggaca atggaaacat tattctgcta 840 ggagactcgc tcggggatct caccatggca gatggtgtcc ccaacgtgga gaacatcctc 900 aagatcggct atctcaatga taaggttgag gaactgttag aaaagtacat ggactcttac 960 aatattgtcc tggcgaggga tgaaacactt gaagtgccta attccatact gcagaagatc 1020 ttataatcga caccacagaa cacagcctgc tcagaaaaga ctcgtattcc aggatattcg 1080 gagtctcctg gatgattcca gcacactgag gccggccttt atacttccac atgcctcaca 1140 agccatacac actctgcacc ccttttaaaa gttatttcca gtcgagataa tgaactattt 1200 taataaacac ctacatccga atttttggtg taaacggata tccaacgaaa aaaatgcatc 1260 acatcgtttg cagattggta caaattattg tttgtagtat ttttgatatg gaaacctgtg 1320 tattcattgt ttgcaataaa cttcgggact gtgaacggta cccaatgata cctcgcgttc 1380 atgaacgtcg tgaatgtgca cttttaaatt cggaagatct gtcacagttc tcggggaatc 1440 tttgtatctc gtgagtacgc aggctgcatg cacagatcca aattaaagct atactgtaaa 1500 tgattgcttt caaaaacagt catgatgtgt tgttagtgtt gtcctatgtg aatgttttag 1560 cataaatgct catcgttttg gtgttgatat ttgcaccttt tgttcacctg caggtaggca 1620 ataaaacttt gtttggtttt ttttctccaa aaaaaaaaaa aaaaaaaaa 1669 // |
|