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EBI DbfetchID BC053179; SV 1; linear; mRNA; STD; VRT; 1876 BP. XX AC BC053179; XX DT 06-JUN-2003 (Rel. 76, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 12) XX DE Danio rerio ST3 beta-galactoside alpha-2,3-sialyltransferase 3, mRNA (cDNA DE clone MGC:63978 IMAGE:6792327), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1876 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1876 RG NIH MGC Project RA ; RT ; RL Submitted (02-JUN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000011740; Danio_rerio. DR Ensembl-Gn; ENSDARG00000015374; Danio_rerio. DR Ensembl-Gn; ENSDARG00000022532; Danio_rerio. DR Ensembl-Gn; ENSDARG00000043075; Danio_rerio. DR Ensembl-Gn; ENSDARG00000053517; Danio_rerio. DR Ensembl-Gn; ENSDARG00000055128; Danio_rerio. DR Ensembl-Gn; ENSDARG00000062270; Danio_rerio. DR Ensembl-Gn; ENSDARG00000074149; Danio_rerio. DR Ensembl-Gn; ENSDARG00000077594; Danio_rerio. DR Ensembl-Tr; ENSDART00000023072; Danio_rerio. DR Ensembl-Tr; ENSDART00000023571; Danio_rerio. DR Ensembl-Tr; ENSDART00000031993; Danio_rerio. DR Ensembl-Tr; ENSDART00000035325; Danio_rerio. DR Ensembl-Tr; ENSDART00000075554; Danio_rerio. DR Ensembl-Tr; ENSDART00000077453; Danio_rerio. DR Ensembl-Tr; ENSDART00000079894; Danio_rerio. DR Ensembl-Tr; ENSDART00000089849; Danio_rerio. DR Ensembl-Tr; ENSDART00000111436; Danio_rerio. DR Ensembl-Tr; ENSDART00000112088; Danio_rerio. DR ImaGenes; IMAGp998G1414297Q. DR ImaGenes; IRAKp961F15117Q. DR ImaGenes; IRBOp991E124D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Leonard I. Zon, M.D. CC cDNA Library Preparation: Invitrogen Corp CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 117 Row: f Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31418825. XX FH Key Location/Qualifiers FH FT source 1..1876 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_ZKid1" FT /clone="MGC:63978 IMAGE:6792327" FT /tissue_type="Kidney, zebrafish" FT /note="Vector: pCMV-SPORT6.1" FT /db_xref="taxon:7955" FT gene 1..1876 FT /gene="st3gal3" FT /note="synonyms: MGC63978, zgc:63978, siat6" FT CDS 195..1271 FT /codon_start=1 FT /gene="st3gal3" FT /product="ST3 beta-galactoside alpha-2,3-sialyltransferase FT 3" FT /db_xref="GOA:Q7T3B9" FT /db_xref="InterPro:IPR001675" FT /db_xref="InterPro:IPR012163" FT /db_xref="UniProtKB/TrEMBL:Q7T3B9" FT /db_xref="ZFIN:ZDB-GENE-040426-1322" FT /protein_id="AAH53179.1" FT /translation="MVLVFFYYSSGRLQLKNSVQKSQADLDSLLSVGRVVASVYDKQGF FT LLKLDKKLPLELQYKYGNLSKGECKQGFAQAKMTLIYPKFSKPAPMFLDPNYKRLSKIS FT SYPPPFGVRTQERIIDNILAATRSYFLGPELDSIPCKKCIIIGNGGILFNKSLGTKIDQ FT YDVVVRLNEAPVAGFEKDVGSKTTMRITYPEGAIQRAERYEKSSLFVLSAFKSNDFKWL FT RHMVYKDRLWRMDGFWKSVARVVPRAPQDMRILNPYFIQEASFRLIGLPHNNGLMGRGN FT IPTLGTVAITMALHNCDEVAVAGFGYDMNTPHAPLHYYEKLRMSAIKESWTHNISREKE FT FLRKLVKAGVIEDLTHGI" XX SQ Sequence 1876 BP; 536 A; 420 C; 414 G; 506 T; 0 other; cgcagagata acagtaatgt tttacccgtt tcccaggggg gccatagaga ctgacgagtg 60 agtccgtcgt gtatttatgg atttattatc attatggccg cgtttctgtg aggtgactcg 120 gcccagatga atcgtcttgt gaaatgttca gaatgaagtc catgcggagc ttcatgtttc 180 taatatgtcc tgtcatggtg ctagtattct tctactattc ctccggtaga ttgcaactaa 240 agaactcagt ccagaaatct caggctgatt tggatagttt actctccgtg ggacgtgtag 300 tagcttcagt gtacgacaag cagggattcc ttctcaagct tgacaaaaaa ctgcccttgg 360 agctccagta taagtatggt aacctaagta aaggcgagtg taaacaagga ttcgcacaag 420 ccaagatgac tttgatctat ccaaagtttt caaaaccagc tcccatgttc cttgatccta 480 attataagcg gctatcaaag atcagcagtt acccacctcc ttttggagta agaacacaag 540 aaaggattat tgataacatt ttagcagcaa caagaagtta cttcctgggt ccagaactag 600 acagtattcc ttgtaagaag tgtattatta tcggcaatgg gggcattctg ttcaataagt 660 ctttgggcac caaaatcgat caatatgatg ttgttgtgcg actgaatgaa gctccagttg 720 caggttttga gaaggacgtg ggctcaaaga ccaccatgcg catcacctac cctgaaggag 780 ccatacagag agctgaacgc tacgagaaga gctcgctgtt cgttttatcc gccttcaaat 840 ccaatgactt caaatggctg cggcacatgg tgtacaaaga caggctgtgg agaatggatg 900 gattctggaa gtctgtggca cgtgtcgttc ctagagctcc acaagacatg cggatcctga 960 acccctattt catacaggaa gcctcgttca gattaatcgg ccttccacac aacaatggcc 1020 tcatgggaag agggaatatt cctacattgg ggactgtggc aatcacgatg gccctccata 1080 actgtgatga ggtagcggta gccggattcg gatatgacat gaacacccct catgcgcctc 1140 tgcactatta tgagaagctg aggatgtctg caatcaaaga gtcatggaca cacaacatat 1200 ccagagagaa ggagtttctc cgaaagctgg tgaaggcggg cgttattgag gacctgaccc 1260 atggcatctg atgtcaaaca atgatagaca gtattcacta tatcagagcg gtgaccggcg 1320 gcgtcttacg tggatatcac tgctaatgga ctcacaaata tgagcttctc aggtccacag 1380 acgtttgagc caatcgcatg aaagcaccgc aggaagtgac ctcagctgat gcgctggact 1440 gtatctcatc tcaaacatgg taatgcttgt aaagctagac ggtctgtccc agtgcaccgc 1500 agcgcccggc aaagacttaa aacatgctgc tttggttttt taagaaactc cacactagca 1560 gctgtgaatt cagtatttat tagacagtat tttaatcaca tcggtaagat gctttatttt 1620 ttatgctaac tcagcttttt atgctttatt aatgttctct taaaatctca ggctatgcac 1680 aacacagcac aatgcaccac cacaccacaa aaccaatgat ctttctgctg ctctgctgtc 1740 tggtgccatt aaaaccaatc agcatccact tgatttctgc acatggacat gtatatcctc 1800 ctccctattt atccggatca tgacaccagg cttcttatta aagtattatt gtttttacaa 1860 aaaaaaaaaa aaaaaa 1876 // |
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