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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC053152; SV 1; linear; mRNA; STD; VRT; 1614 BP.
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AC   BC053152;
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DT   06-JUN-2003 (Rel. 76, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 12)
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DE   Danio rerio cysteine conjugate-beta lyase 2, mRNA (cDNA clone MGC:63929
DE   IMAGE:6790955), complete cds.
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KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-1614
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1614
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (02-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000013423; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000021201; Danio_rerio.
DR   ImaGenes; IMAGp998N1014293Q.
DR   ImaGenes; IRAKp961D18117Q.
DR   ImaGenes; IRBOp991A123D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Leonard I. Zon, M.D.
CC   cDNA Library Preparation: Invitrogen Corp
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 117 Row: d Column: 18
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 31419183.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1614
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_ZKid1"
FT                   /clone="MGC:63929 IMAGE:6790955"
FT                   /tissue_type="Kidney, zebrafish"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:7955"
FT   gene            1..1614
FT                   /gene="ccbl2"
FT                   /note="synonyms: MGC63929, zgc:63929"
FT   CDS             166..1425
FT                   /codon_start=1
FT                   /gene="ccbl2"
FT                   /product="cysteine conjugate-beta lyase 2"
FT                   /db_xref="GOA:Q7T3E5"
FT                   /db_xref="HSSP:1DJU"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7T3E5"
FT                   /db_xref="ZFIN:ZDB-GENE-040426-1299"
FT                   /protein_id="AAH53152.1"
FT                   /translation="MASIKHKNARRIEGLDKNVWVAFTSVAADPSIVNLGQGYPDIPPP
FT                   SYVKEGLAQAAMVDRLNQYTRGFGHPTLVKALSKVYGKVYDRQLDPFKEILVTVGGYGS
FT                   LFSTMQALVEEGDEVIIIEPFFDCYVPMVKMAGAKPVLIPLRLKSTATTGISSADWVLD
FT                   QEELASKFNSKTKAIIVNTPNNPIGKIFSRSELQAIADLCIKHDTLCFSDEVYEWLIYK
FT                   GHEHVKIATLPGMWDRTITVGSAGKTFSVTGWKLGWSIGPEHLIRHLQTVMQNSLYTCP
FT                   TPLQEAVGRGLLRDFELMGQPDCYFSALALELEGKRDRMAAMLAQTGMTPVVPEGGYFM
FT                   IVDVTALNQDLTHMGDDEPYDYKFVKWMIKEKKLAAIPVTAFVGEDSVKQFEKYIRLCF
FT                   IKQESTLDAAEAILKNWNKG"
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SQ   Sequence 1614 BP; 484 A; 313 C; 374 G; 443 T; 0 other;
     ccgagaccgc aatgttttga agtgagcaat gacttttttt tatacgatat taacttattt        60
     cgccagatag ttatgcatcc tattcatctg cttcgcattg tcagttctgt ccgacgctta       120
     ttacagacta atagatgtag aagtttctcc tcctgccaac acaacatggc atccataaaa       180
     cacaaaaacg cgagaaggat agaaggcctg gacaagaatg tatgggtggc tttcacatca       240
     gtggctgcag acccttctat tgtgaatctt ggacagggtt acccagacat tcctcctcct       300
     tcatatgtga aagagggtct cgctcaagca gcaatggtag accgtctgaa ccagtacaca       360
     cgtggctttg gtcacccgac actggttaaa gctctgtcaa aagtgtatgg aaaagtctat       420
     gatcgtcagc ttgatccttt taaagaaatt ctggtcacag taggtggata tggatctttg       480
     ttcagcacta tgcaggctct ggttgaggag ggagatgagg ttattattat agaacctttt       540
     tttgactgct atgtacctat ggtgaaaatg gcaggggcca aacctgtttt aataccattg       600
     cgattgaagt cgacagcaac aactggtata agtagtgctg actgggttct ggaccaggaa       660
     gaacttgcta gcaagttcaa ctccaaaacc aaagctatca tcgtcaacac tcctaataac       720
     cctattggaa aaatattcag taggagcgag ttgcaagcta tcgcagatct ctgcatcaaa       780
     catgacactc tgtgcttcag tgatgaggtt tatgaatggc tgatatataa aggtcatgag       840
     catgtaaaga tagcaaccct tcctggaatg tgggacagaa ccatcactgt tggcagtgca       900
     gggaaaacat tcagcgtgac tggatggaag ttgggctggt ccattgggcc tgaacacctg       960
     atcagacacc tgcagactgt catgcagaac agtctatata catgtccaac accattacag      1020
     gaggctgttg gccggggtct tcttcgggac tttgagctga tgggtcagcc agactgctac      1080
     ttctccgctc tggctttaga actggaaggt aaaagagatc gcatggctgc catgttggct      1140
     cagaccggca tgactccagt ggttcctgaa ggaggatact tcatgatagt ggatgtcaca      1200
     gcgctcaatc aggatctgac acatatggga gatgatgaac catatgatta caagttcgtc      1260
     aagtggatga taaaagagaa gaaattggct gcaattcctg taacagcttt tgtgggagaa      1320
     gattccgtta aacagtttga gaaatacatt cgcttgtgtt ttatcaagca agaaagcact      1380
     ttggatgcag cagaggccat tctgaagaac tggaacaaag gctgataata ctttaatagt      1440
     gtgcaacaga ctggtcagat ttgcaacatt tttactaagt tatgttgttg acctaaactg      1500
     tggctcaagt ttacaattac agtttgctga aaaagctatt ttaatgtctg gagagattat      1560
     aatctgtgct cattttgaaa taaataaaat agtaaataaa aaaaaaaaaa aaaa            1614
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