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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC052142; SV 1; linear; mRNA; STD; VRT; 1746 BP.
XX
AC   BC052142;
XX
DT   06-MAY-2003 (Rel. 75, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 11)
XX
DE   Danio rerio globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like
DE   1, mRNA (cDNA clone MGC:56701 IMAGE:6034178), complete cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1746
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1746
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-MAY-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000025275; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000019992; Danio_rerio.
DR   ImaGenes; IMAGp998F0313260Q.
DR   ImaGenes; IRAKp961P05104Q.
DR   ImaGenes; IRBOp991C0824D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Sumio Sugano
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 104 Row: p Column: 5
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 30354606.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1746
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="Sugano SJD adult male"
FT                   /clone="MGC:56701 IMAGE:6034178"
FT                   /tissue_type="Whole body, adult male"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1746
FT                   /gene="gbgt1l1"
FT                   /note="synonym: zgc:56701"
FT   CDS             132..1082
FT                   /codon_start=1
FT                   /gene="gbgt1l1"
FT                   /product="globoside
FT                   alpha-1,3-N-acetylgalactosaminyltransferase 1, like 1"
FT                   /db_xref="GOA:Q7ZTV7"
FT                   /db_xref="HSSP:1LZJ"
FT                   /db_xref="InterPro:IPR005076"
FT                   /db_xref="UniProtKB/TrEMBL:Q7ZTV7"
FT                   /db_xref="ZFIN:ZDB-GENE-040426-1117"
FT                   /protein_id="AAH52142.1"
FT                   /translation="MRIRQSSNFFLLGVTAGLPLTGLIFFGYTTIWFRSQQMDNFGRTD
FT                   VVTLTPWLAPVVWTGTFDSKMIDSIYKHQNITVATTVFALGKYTRFLKDFLESAEEHYF
FT                   DGFRVHYYLFTDQPEAVPEVKMGENHRLTVRKVPSLDRWQDISMGRMEILEKLIADELM
FT                   HEANYIFCLDVDTKFYGRWGSETLGNLVGVIHPWFFDYPRESFTYERRPESKAFIAVGE
FT                   GDYYYTAAAFGGTLEEIHRLTKTCREQLNADHENSIEAIWHEESHLNKYFLYNKPTKLL
FT                   SPEYLWRDINISAGQIRIVRFSHVAKNNAEVRPNL"
XX
SQ   Sequence 1746 BP; 581 A; 313 C; 342 G; 510 T; 0 other;
     atctcaagca gagagaacaa tcgactgttc aaatcctgaa tgttgctgat tcctggcaga        60
     agcgtgcagc acaaaaacat tatcaattta tcaagtgaat tcggacacac agcccagctg       120
     atacggcaat aatgcgaatc cgtcagagct caaatttctt tcttcttggg gtgactgctg       180
     gcttgccact gactgggctg attttttttg gctacaccac tatatggttc agaagtcaac       240
     aaatggacaa ctttggtcgg acggatgttg ttactttgac accatggctg gccccagttg       300
     tttggacggg aacctttgac tccaaaatga ttgactctat ctacaaacac caaaacatca       360
     ctgtagcgac cacagtcttc gccctgggaa aatacacgcg ttttctcaaa gattttctgg       420
     agtcagcgga ggagcattac tttgatggat ttcgagtcca ttattacctg ttcacggatc       480
     agcctgaagc agttcctgaa gtaaagatgg gtgaaaacca tcgtttgaca gtcagaaagg       540
     tcccaagttt ggaccgatgg caggacatca gtatgggcag gatggagata ctggaaaaac       600
     taatagcgga tgaactgatg catgaagcca actatatatt ctgcctcgat gtggatacaa       660
     agttctatgg ccgctgggga tcagagactt tgggtaatct ggtaggtgtg attcaccctt       720
     ggttttttga ttatccaagg gaatcattta catacgagcg aagaccggag tctaaagcat       780
     tcattgcggt tggggaaggt gattattatt acactgctgc cgcatttggt ggcacattag       840
     aggaaataca tcgtctcacc aaaacctgcc gcgagcagct gaacgctgat catgaaaact       900
     ccattgaggc aatatggcat gaggagtctc acttgaacaa gtatttcctt tacaacaaac       960
     ccactaagct gctgtcacct gagtatctgt ggcgggacat caacataagt gcaggacaaa      1020
     taagaattgt tcgcttctct catgtggcta aaaacaatgc agaggttcgt ccgaacttgt      1080
     agcatatttc aggctgttta catccacgtc aggaggttca tgtttctcac aaaagcatca      1140
     ccttaatcat tttgagacac aaactggtca aatcaatcat gattgtgttt tttaattgtc      1200
     tgtttacatt taaatcttgc atacattact gaatatgtct gatatctgaa ttcatctaaa      1260
     acttactaaa tgctgattaa tagtgtcatg acgaatttca aatatatgac taagtcagat      1320
     gagccatgtg tataatatgt taaaatataa tgttgtgtaa ataatgtgag ctgtgaataa      1380
     gtagtattta atgatattta aagcaatcac tgccaatctt aaattaagtg atatgttaag      1440
     tcaaaataca gatatgcgta taatatttat ttgacaatta ttatttgctt tactaaaaaa      1500
     aaatgtgcat attaaaaaaa caacactaac gcaagaaaca aataacaata aatatttata      1560
     ttgtcttttt gtaagcatga actatggttt tatgctttca actaggtttt tggttgtaat      1620
     tttaagatgt aattaaaatt cctttacctc catcaaaaaa attaataaat gaaaccactt      1680
     taatggtaaa tgcagactgt ggtaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1740
     aaaaaa                                                                 1746
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