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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC050163; SV 1; linear; mRNA; STD; VRT; 1587 BP.
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AC   BC050163;
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DT   03-APR-2003 (Rel. 75, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 11)
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DE   Danio rerio sterol-C4-methyl oxidase-like, mRNA (cDNA clone MGC:56437
DE   IMAGE:5612161), complete cds.
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KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
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RN   [1]
RP   1-1587
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1587
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000017762; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000023587; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000042456; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000055876; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000071319; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000076580; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000076960; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000018895; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000030934; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000062254; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000078277; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000105374; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000110861; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000113512; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000114615; Danio_rerio.
DR   ImaGenes; IMAGp998F0212421Q.
DR   ImaGenes; IRAKp961D04104Q.
DR   ImaGenes; IRBOp991G1122D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Sumio Sugano
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 104 Row: d Column: 4
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 29477147.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1587
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="Sugano SJD adult male"
FT                   /clone="MGC:56437 IMAGE:5612161"
FT                   /tissue_type="Whole body, adult male"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1587
FT                   /gene="sc4mol"
FT                   /note="synonyms: fb59g06, wu:fb59g06, wu:fb66e06, fb66e06,
FT                   zgc:56437"
FT   CDS             75..950
FT                   /codon_start=1
FT                   /gene="sc4mol"
FT                   /product="sterol-C4-methyl oxidase-like"
FT                   /db_xref="GOA:Q7ZW77"
FT                   /db_xref="InterPro:IPR006694"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7ZW77"
FT                   /db_xref="ZFIN:ZDB-GENE-040426-2670"
FT                   /protein_id="AAH50163.1"
FT                   /translation="MEVNGTANILSSAFLAVEFVDSFLPQNPLQEPFKHAWNHMLQNYT
FT                   KFQIATWGSLIVHELIYFLFCLPGFIFQFLPFMQKYKIQPDKPETWEKQWKCFKMLLFN
FT                   HFCIQLPLICGTYYFTEFFSIPYDWDTMPRWPFLLAQCFGCAVIEDTWHYFLHRALHHR
FT                   RIYKYIHKVHHDFTSPFGMQAEYAHPLETLILGAGFFIGTMVFCNHMILLWAWVTFRLL
FT                   ETIDVHSGYDIPLNPLHLIPFYAGARFHDFHHMNFVGNYGSTFTWWDRLFDTDSQFNKH
FT                   YSHHKTAKSD"
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SQ   Sequence 1587 BP; 443 A; 368 C; 282 G; 494 T; 0 other;
     gtcctacagt taacgcaggt agaaggactt cttctcacag ttactcattc ggagagtctc        60
     actgactcgc tgccatggag gtgaacggca cagccaacat cctgtcttca gcttttctgg       120
     cggtggaatt tgtggattca tttcttccgc aaaatccact gcaggaacct tttaaacatg       180
     cgtggaacca catgctgcag aactacacca aattccagat cgccacctgg ggctcgctca       240
     tcgtccatga actcatctat ttcctcttct gcctgcctgg atttatcttt cagtttcttc       300
     ctttcatgca aaagtataag atccagccgg ataaaccaga gacatgggag aaacagtgga       360
     agtgcttcaa gatgctgctg tttaatcact tctgtataca gctaccgctc atctgcggca       420
     catattactt cactgagttc ttcagcatcc cttatgactg ggacaccatg ccccgctggc       480
     cttttctact ggcccagtgt tttggttgtg ctgtaattga agacacatgg cattactttc       540
     tccaccgagc tctacatcat cgcagaatct acaaatacat tcataaagtc catcacgact       600
     tcacttctcc atttggcatg caggcagaat atgcccaccc tcttgagact ttgatactgg       660
     gcgctggatt cttcattggc accatggtct tctgcaatca tatgatctta ctgtgggcct       720
     gggtcacttt ccgcctgctg gaaaccattg atgttcacag tggttacgac attcctctga       780
     accccctgca tctgattcca ttttatgctg gagctcgttt tcatgatttc caccacatga       840
     attttgttgg caactatggc tctacattca cctggtggga cagacttttc gacaccgatt       900
     cccagttcaa caaacattac tcgcatcata aaactgcgaa gagcgactga acagcagaaa       960
     tcacacacaa tgatgcttca ccatcatcta aaatctctca gctcttatgg acttctgtgt      1020
     gggctttggt tggtctgatg ccccccgctg cacacgttca ttgtaaagta tttaatattg      1080
     gactgaatga ttttaaatca tttccagatt cttagagaat atgtgccttt gagaagggac      1140
     aacgtcccac aaacaacttt agaccactgg tcacagtact ccaacagact ggttttcagg      1200
     aattgtgcct gttttctgtg ctttccatta ttacaatcat tcttcggttt caaataatga      1260
     tgacatcatt ccctaaaagc actttacttt cacctaaaca aagatgcaat gttttaaatt      1320
     gttatttttg taatggctta ttttgctttg ttgccttaca cgatttattt tcttgcaaaa      1380
     tttctttatt ttgtgactgt acacgatgac aacacagaga atgttaatgt acaatatgca      1440
     acatttatca aatcattctg ttttatggtt catgagggaa aaaagctaat ttatttgtta      1500
     gcttgttcat ttgaaggcaa cttaaaaata ataataaata aaaataaaaa cagatttaca      1560
     agaaaaaaaa aaaaaaaaaa aaaaaaa                                          1587
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