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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC049639; SV 1; linear; mRNA; STD; MUS; 657 BP.
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AC   BC049639;
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DT   02-APR-2003 (Rel. 75, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 8)
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DE   Mus musculus RIKEN cDNA 1110008P14 gene, mRNA (cDNA clone MGC:58399
DE   IMAGE:6590746), complete cds.
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KW   MGC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
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RN   [1]
RP   1-657
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-657
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (31-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000123481.
DR   Ensembl-Gn; ENSMUSG00000039195; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000048792; Mus_musculus.
DR   ImaGenes; IMAGp958D102811Q.
DR   ImaGenes; IRALp962E2345Q.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Michael Brownstein
CC   cDNA Library Preparation: Michael Brownstein /  Ted Usdin
CC   Laboratory
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAL Plate: 45 Row: e Column: 23
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 37574083.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..657
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_MGC_144"
FT                   /clone="MGC:58399 IMAGE:6590746"
FT                   /tissue_type="Brain, mouse"
FT                   /note="Vector: pDNR-LIB"
FT                   /db_xref="taxon:10090"
FT   gene            1..657
FT                   /gene="1110008P14Rik"
FT   CDS             65..316
FT                   /codon_start=1
FT                   /gene="1110008P14Rik"
FT                   /product="RIKEN cDNA 1110008P14 gene"
FT                   /db_xref="InterPro:IPR005374"
FT                   /db_xref="MGI:1920987"
FT                   /db_xref="UniProtKB/Swiss-Prot:P58686"
FT                   /protein_id="AAH49639.1"
FT                   /translation="MSGPNGDLGMPVDAGTEGENDSFGEAEYAAINSMLDQINSCLDHL
FT                   EEKNDHLHARLQELLESNRQTRLEFQQQLGEAPGDASP"
FT   misc_difference 570..657
FT                   /gene="1110008P14Rik"
FT                   /note="polyA tail: 88 bases do not align to the mouse
FT                   genome."
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SQ   Sequence 657 BP; 199 A; 190 C; 151 G; 117 T; 0 other;
     ggctttccgc gcgacgatcg ccaagttcca tcttcgcgtg gcctctgcgg cgcccgagcc        60
     cgcaatgtcg ggccccaacg gggacctagg catgccggtg gatgcgggca cggaaggaga       120
     gaatgacagc ttcggggaag cagagtatgc tgccatcaac tccatgttgg atcagatcaa       180
     ctcttgtctg gaccacctgg aggagaagaa tgaccacctc catgcccgcc tccaggagct       240
     gctggagtcg aaccggcaga cgcgcctgga attccagcaa cagcttgggg aggcccctgg       300
     cgatgccagc ccctaggtgc cgggagcccc catccaggcc ctaccctcac ctctctaggc       360
     catgttctgg cctgggtaga tactacttgg cttagacacc atctcgggta ctggcctcca       420
     gatcctagtg ggtctaccag cctggaccag tccccattca ctgcccatca cccttcctgg       480
     agtcaggtgc aatcctacag ttctcccact tgtctgtctt ctttcccctc catccagact       540
     gagagtccga attaaagatg tctcccacaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa       600
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa ataaaaaaaa aaaaaaaaaa aaaaaaa          657
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