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EBI DbfetchID BC049316; SV 1; linear; mRNA; STD; VRT; 2355 BP. XX AC BC049316; XX DT 26-MAR-2003 (Rel. 75, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Danio rerio galactosylceramidase b, mRNA (cDNA clone MGC:56444 DE IMAGE:5612358), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2355 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2355 RG NIH MGC Project RA ; RT ; RL Submitted (24-MAR-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000016474; Danio_rerio. DR Ensembl-Tr; ENSDART00000028044; Danio_rerio. DR ImaGenes; IMAGp998N0712421Q. DR ImaGenes; IRAKp961D09104Q. DR ImaGenes; IRBOp991F0522D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 104 Row: d Column: 9 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 29179662. XX FH Key Location/Qualifiers FH FT source 1..2355 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="Sugano SJD adult male" FT /clone="MGC:56444 IMAGE:5612358" FT /tissue_type="Whole body, adult male" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2355 FT /gene="galcb" FT /note="synonyms: galc, wu:fi04e07, zgc:56444" FT CDS 59..2053 FT /codon_start=1 FT /gene="galcb" FT /product="galactosylceramidase b" FT /db_xref="GOA:Q7ZUD5" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q7ZUD5" FT /db_xref="ZFIN:ZDB-GENE-040426-2115" FT /protein_id="AAH49316.1" FT /translation="MYIGNQCCVVLSIFLYISGCLGENYDIDDSLGLGQTFDGIGGLSG FT GGATSRLLVNYEEPYRSQILDYLFKPKFGASLQILKVEIGGDAQTTDGTEPSHMHYEDD FT ENYFRGYEWWLMVEAKKRNPNITLIGLPWAFPGWVGNGKNWPYDFPDITASYVVAWIHG FT AKKYHDLDIDYIGIWNEKSFNVKYIKLLRYLLDKRGLEKVKIIASDDLWEPITSAVFAD FT KELYDAIEVLGVHYPGTKTVPRALKTGKKLWSSEDYSTFNDNVGGGCWARILNQNYVNG FT KMTATISWNLVASYYENLPFGRDGIMTANEPWSGNYVVESPVWTTAHTTQFTEPGWTYL FT QTVGHFTHGGSYVALTDQRGNLSIITETMTHDHSVCIRPPLRPYNVTVQNVTFNLKGTF FT AFISQLDVWHSKFDFKTDKTVLFQKLDPVKVIGGSFSIELDVDEIYTFTTITNGQRGTY FT PDPPPSAPFPKSYRDDFNVSGNFSEAPNFADQTGVFEYFTNLTDPGPHVFTLRQVVTQR FT PITWAADADQTISVIGDYGWHDIMVSCDVYMEAVQTGGVFIAARVDRGGGVIRSTRGVF FT FWVYADGTYKITNDLRGLAVLAKGSAGTRARTWYTLTLRVQGNYASADLNGYSLWKNAV FT LLNPLHGWVAIGTSSFQLAQFDNFVIEAE" XX SQ Sequence 2355 BP; 720 A; 447 C; 533 G; 655 T; 0 other; aaaaaaaaaa aaaaaaaaaa aagtcagctg ataatgttgt aggaacgcac gggatagaat 60 gtacatagga aatcagtgtt gtgtggtttt gagcattttt ctctatatca gtggttgttt 120 aggggagaat tacgatatag atgatagtct cggattagga caaacgtttg atggcattgg 180 tggattaagc ggtggtgggg cgacatcgcg tttacttgtc aattatgagg agccatatcg 240 gagtcagata ctagactacc tgtttaagcc aaaatttgga gcctccttac aaatcctaaa 300 ggttgaaatc ggaggcgatg ctcagactac agatggaact gagccctcac acatgcacta 360 tgaagatgat gagaattatt ttagagggta tgaatggtgg ctaatggtgg aagccaagaa 420 gaggaatcca aacatcaccc tcataggtct accatgggcc tttccaggtt gggttggaaa 480 tggtaaaaac tggccttatg atttccctga tatcactgcc tcttatgtgg tggcgtggat 540 tcatggagct aagaagtacc atgacctgga tattgactat atcgggatat ggaatgaaaa 600 gagctttaat gtgaaataca taaagctttt gcgatactta ctggataaaa ggggtctgga 660 aaaagttaaa atcattgcca gtgatgacct ctgggagcca atcacctctg ctgtatttgc 720 tgacaaagaa ttatatgatg ctattgaagt cttgggggta cattacccag gcacaaaaac 780 tgtgcctcgt gccctgaaga ctggcaagaa actgtggtcc tctgaagact atagtacctt 840 caatgacaat gttggcggag gttgctgggc ccgaattctc aaccagaact atgtcaatgg 900 caaaatgaca gcgaccatat cctggaacct tgttgcaagt tattatgaga accttccctt 960 tggaagagat ggaataatga ctgcaaatga gccgtggagt ggaaattatg ttgttgagtc 1020 ccctgtttgg acaacagccc acactaccca gtttactgag cctggctgga catacctgca 1080 gacagtagga cacttcactc atggtgggag ttacgttgca ctgactgatc agagaggaaa 1140 tctctcaata atcactgaaa ctatgaccca tgaccactct gtgtgtatcc gacctcctct 1200 gcgtccctat aatgtcacag tccagaatgt aacattcaat ctgaaaggaa cttttgcttt 1260 catcagccag ctggatgtgt ggcactcaaa gtttgatttc aagacagata agacggtcct 1320 cttccaaaaa cttgaccctg ttaaagtaat aggtgggtct ttcagcatag agcttgatgt 1380 cgatgaaata tatacattta ctactataac caatggtcag agagggactt accctgatcc 1440 tccaccctct gctccatttc ctaaatcata cagagatgat tttaatgtct ctggaaattt 1500 ctcagaagct ccgaactttg cagatcagac aggggttttt gaatacttca ctaaccttac 1560 agatcctgga cctcatgttt ttactctgcg tcaggtggtc actcagcgtc ccatcacatg 1620 ggctgcagat gctgatcaga caataagtgt cattggtgat tatgggtggc atgacataat 1680 ggtgtcgtgt gacgtctaca tggaggctgt ccagaccggt ggagtattca ttgccgctcg 1740 agtggacaga ggtggaggtg tcatccgaag tacaagagga gtctttttct gggtgtatgc 1800 tgatggcacc tacaaaatca ccaatgatct ccgtggattg gcggtccttg ccaaaggttc 1860 ggctggaact agagcacgta catggtacac attgaccctt agagtccagg gaaactatgc 1920 ctcagcagat ctcaatggct attctctgtg gaagaatgca gtgctcttga accctctgca 1980 tggatgggtg gccataggca ctagttcttt tcaacttgca cagtttgata attttgtcat 2040 agaggcagaa taacacccca tactgtattt atattcattg ctgtgtcagt gtataaacaa 2100 gcagactgaa aacaagcatc ttcaggactg tgagactaat gtgattttat gaagaaatta 2160 atttattaag gatatgctgc tatgtgcctt aaaattgaga actatgtaat aataaaatta 2220 aaagtatgat gtatatttac tttttctttg ttgaaaatca aatactgata ctaattaaat 2280 cacctcaatc ttttacattc tcgtgcttga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2340 aaaaaaaaaa aaaaa 2355 // |
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