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EBI DbfetchID BC048939; SV 1; linear; mRNA; STD; MUS; 2192 BP. XX AC BC048939; XX DT 29-MAR-2003 (Rel. 75, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus RIKEN cDNA A130022J15 gene, mRNA (cDNA clone MGC:57001 DE IMAGE:6439908), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2192 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2192 RG NIH MGC Project RA ; RT ; RL Submitted (17-MAR-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000176515. DR Ensembl-Gn; ENSMUSG00000035245; Mus_musculus. DR Ensembl-Tr; ENSMUST00000054344; Mus_musculus. DR ImaGenes; IMAGp998K1313960Q. DR ImaGenes; IRAKp961K08105Q. DR ImaGenes; IRAVp968F1092D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 105 Row: k Column: 8 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31341577. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2192 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N-3" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam2" FT /clone="MGC:57001 IMAGE:6439908" FT /tissue_type="Mammary tumor. MMTV-LTR/INT3 model. 5 month FT old mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2192 FT /gene="A130022J15Rik" FT misc_difference 1..3 FT /gene="A130022J15Rik" FT /note="3 bases at the 5' end do not align to the mouse FT genome." FT CDS 45..1628 FT /codon_start=1 FT /gene="A130022J15Rik" FT /product="RIKEN cDNA A130022J15 gene" FT /db_xref="GOA:Q8BYW9" FT /db_xref="InterPro:IPR007657" FT /db_xref="MGI:2141669" FT /db_xref="UniProtKB/Swiss-Prot:Q8BYW9" FT /protein_id="AAH48939.1" FT /translation="MLMLLVFGVLLHEVPLSGQDKAHSEADDAPGKALYDYSSLRLPAE FT HIPFFLHNNRHVASVCREDSHCPYKKHLENLNYCWGYEKSCAPEFRFGSPVCSYVDLGW FT TDTLESAQDMFWRQADFGYARERLGEIRTICQPERASDSSLVCSRYLQYCRATGLYLDL FT RNIKRNHDRFKEDFLQGGEIGGYCKLDSHALVSEGQRKSPLQSWFAELQGYTQLNFRPI FT EDAKCDIVVEKPTYFMKLDAGINMYHHFCDFLNLYLTQHVNNSFSTDVYIVMWDTSTYG FT YGDLFSDTWKAFTDYDVIHLKTYDSKKVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTG FT LFRAFSQHVLHRLNITQEGPKDGKVRVTILARSTEYRKILNQDELVNALKTVSTFEVRV FT VDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLA FT RLRGIHYITWRKPSKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAAEHVLQHPQ FT WPFKKKHDEL" FT misc_difference 416 FT /gene="A130022J15Rik" FT /note="'T' in cDNA is 'G' in the mouse genome; no amino FT acid change." FT misc_difference 620 FT /gene="A130022J15Rik" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 686 FT /gene="A130022J15Rik" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 779 FT /gene="A130022J15Rik" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 1433 FT /gene="A130022J15Rik" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 1466 FT /gene="A130022J15Rik" FT /note="'G' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 1944 FT /gene="A130022J15Rik" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 1992 FT /gene="A130022J15Rik" FT /note="'C' in cDNA is 'A' in the mouse genome." FT misc_difference 2133..2192 FT /gene="A130022J15Rik" FT /note="polyA tail: 60 bases do not align to the mouse FT genome." XX SQ Sequence 2192 BP; 619 A; 493 C; 504 G; 576 T; 0 other; ccgccggagg ggattctgag gactaaaaag gtctgcaggt tgctatgtta atgctgcttg 60 tctttggagt attgcttcat gaagtcccac tgagtggcca ggacaaggct cattctgagg 120 ctgacgatgc gcctggcaag gccctgtatg actactccag cctccgcctc cctgcggagc 180 acattccctt cttcttgcac aataacaggc atgttgcctc tgtgtgcagg gaggattccc 240 actgtccata taagaaacac ttagaaaatc taaactactg ctggggttat gagaagtcct 300 gcgcaccaga gtttagattc ggttcccccg tttgcagcta tgtcgacttg ggatggaccg 360 atactctgga gtcagcccag gacatgttct ggaggcaagc tgactttgga tatgctcgag 420 agcgactggg agagataaga acgatctgcc agccagagag agcaagcgac tcaagtctgg 480 tttgctcccg ttaccttcag tattgtagag ctactggtct atacctggac ttaagaaaca 540 tcaagagaaa ccacgacaga ttcaaggaag attttcttca gggtggtgaa attggtggat 600 actgtaaact tgacagtcac gcactggtgt ctgaagggca gcgtaaaagt cccctgcagt 660 cttggtttgc tgagctacaa ggctatacgc agctcaattt caggcctata gaagatgcta 720 aatgtgacat cgttgttgaa aaaccaacgt atttcatgaa attagatgca ggtattaaca 780 tgtaccacca cttctgtgac ttcctgaatc tctacctcac tcagcacgtt aacaattctt 840 tcagcacgga cgtgtacatc gtgatgtggg acaccagcac ttacgggtat ggtgacctct 900 tctccgatac ctggaaagca tttactgact atgacgtcat acatttgaaa acctatgatt 960 ccaaaaaggt gtgttttaaa gaagccgtgt tttcgttgct gccccgcatg cggtacgggc 1020 tgttctataa cacgcctctg atctctggct gtcagaatac aggattattc agagccttct 1080 cccagcatgt gctgcatagg ctgaacatca ctcaagaggg acccaaggat ggcaaagttc 1140 gagttaccat tcttgcacgc agcacagaat accggaaaat cctgaaccaa gacgagctgg 1200 taaatgcact gaaaacagta tccacatttg aagtccgggt ggttgattac aagtacagag 1260 aactcgggtt tttagatcag ctcaggatca cgcacaacac ggacatattt attggcatgc 1320 atggagctgg ccttacccac ttacttttcc ttccggactg ggctgctgtg ttcgagctgt 1380 acaactgtga agatgagcgc tgctacttag acctggccag gctcagaggc attcactaca 1440 tcacctggcg gaagcccagc aaagtgtttc ctcaggataa gggtcaccat ccaactctgg 1500 gagaacaccc gaagtttacc aactactctt ttgatgtaga agaattcatg taccttgtcc 1560 ttcaggctgc agagcatgta ctgcagcacc cacagtggcc atttaagaag aaacatgatg 1620 agctatagaa gtgttgaggt tgtttccaag agtgttgaca ccctctcaca gccatagact 1680 cacaatcaga ggagcagaac agcctgtcat atcctactgt aagaggaaac atgacgtttt 1740 acttctgaat atagctcagg ctgaccttga actagtgatc ctcttgcctg agccaactga 1800 gtgctcacct tacaggtgtg ccccaccatg cctgtctaca gagttacttt ttgtatatga 1860 aagcacacct ccaggagatg ctaagtcttc catgtgttta ttgtgtcttt gctatttatc 1920 aaaggtattt ttgcactgaa aaaagttact tttatagttc aaaggtgggc agatgcccat 1980 tggtgtggca gcgctctcct gtggggatgc aaagttgtca acatcggtgg cttcagactt 2040 gatatatgtg tttgttaact gtaatgtgat cttgattcca gagtgtcatg gcttcatcta 2100 tttggataaa ctcatctatt tggataaact caaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2160 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa 2192 // |
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