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EBI DbfetchID BC046890; SV 1; linear; mRNA; STD; VRT; 2298 BP. XX AC BC046890; XX DT 20-FEB-2003 (Rel. 74, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 12) XX DE Danio rerio UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide DE 6, mRNA (cDNA clone MGC:55730 IMAGE:3816152), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2298 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2298 RG NIH MGC Project RA ; RT ; RL Submitted (14-FEB-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ImaGenes; IMAGp998D099103Q. DR ImaGenes; IRAKp961F22102Q. DR ImaGenes; IRBOp991C0615D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 102 Row: f Column: 22 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 28422370. XX FH Key Location/Qualifiers FH FT source 1..2298 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="MGC:55730 IMAGE:3816152" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2298 FT /gene="b4galt6" FT /note="synonyms: MGC55730, zgc:55730" FT CDS 286..1431 FT /codon_start=1 FT /gene="b4galt6" FT /product="UDP-Gal:betaGlcNAc beta FT 1,4-galactosyltransferase, polypeptide 6" FT /db_xref="GOA:Q802Y5" FT /db_xref="HSSP:1NMM" FT /db_xref="InterPro:IPR003859" FT /db_xref="UniProtKB/TrEMBL:Q802Y5" FT /db_xref="ZFIN:ZDB-GENE-040426-789" FT /protein_id="AAH46890.1" FT /translation="MWKWRRLMRLSNRSLMAFIFFFSMSTTCLYFIYVAPGIVNTYFFM FT VQAQGIMLRDNVRTIGHMIRLYTNKNSTLNGTDYPDGSNSSEYIAQPTTYLPENFTYAQ FT NLPCPERLPSMKGQMEVNMTEVPMEEIELRLKHMDIQFGGHWKPKDCKPRWKVAILIPF FT RNRHERLPILFQHLTPMLQRQRLQFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDLDWDC FT VVFHDVDHIPENDRNYYGCGQMPRHFAAKLDKYMYILPYNEFFGGVSGLTVEQFLKING FT FPNAFWGWGGEDDDLWNRVHYAGFNVTRPEGDIGKYKSIPHHHRGEVQFLGRYKLLRYS FT KERQHLDGLNNLQYSPEISLSNLYKNITVNLNPELALIAEY" XX SQ Sequence 2298 BP; 631 A; 520 C; 502 G; 645 T; 0 other; aaaaatgcat cgcgctgacc gcccgccgag cacggacggc gtttgatgta gcacgtttta 60 ttatttattt atttttcgat ctggaaattt cttgactttg ttgggagagc gagcgagcac 120 tgcggccttg catccagctg aatgaacgat gcggacttta ccagcagcct gatttagcac 180 cgcatttccc acccggatga ccgttttcag cacagccaac agcgtctctt ttctgcgatc 240 tgcgtgtttt tatgggagtg acggatagct agtagccgag acacaatgtg gaagtggagg 300 cggctgatgc ggttgtccaa ccgctcctta atggccttca tctttttctt ctccatgtcc 360 acgacctgcc tctactttat ttatgtggct cccgggatag tcaacacata tttcttcatg 420 gtacaggctc agggtatcat gttgcgagac aatgtgcgga ccattggtca catgatcaga 480 ctatacacca acaagaacag tacactcaac ggcacagatt atccagatgg aagtaactcc 540 agcgagtata tcgctcagcc aaccacatac ctcccagaga acttcacata tgctcagaac 600 ctgccctgtc cagaacggtt accttctatg aagggtcaga tggaagtcaa catgacagag 660 gttcctatgg aggagattga actgagactc aaacatatgg acattcaatt cggaggccac 720 tggaagccca aagattgcaa accacgctgg aaggtggcca tattaatccc ctttaggaat 780 cgccatgagc gtcttcccat tctatttcag caccttactc caatgctcca acgccaacgc 840 ttgcagtttg ccttttatgt cattgaacag acgggtactc agccgtttaa ccgtgccatg 900 ctgtttaacg tgggctttaa agaggctatg aaagacctgg actgggactg tgtggtgttt 960 cacgacgtcg atcacattcc agaaaacgac cgtaattact acggctgtgg tcagatgcct 1020 cgacacttcg ccgccaagct ggacaaatac atgtacatcc ttccctacaa tgagtttttt 1080 ggtggagtga gtggacttac tgttgaacag tttctcaaga tcaatggctt tcccaatgca 1140 ttctggggct ggggaggaga ggacgatgac ctctggaaca gggttcatta tgcaggcttc 1200 aatgttacca ggccagaagg tgatattggc aaatacaaat ctatccccca tcaccacaga 1260 ggagaagtgc aattcttggg aaggtacaag ttgctgaggt actccaaaga gcgacagcat 1320 ctggacggct tgaacaatct gcagtactct ccggaaatct ctctgagcaa cctgtataag 1380 aacatcacag tcaacctcaa tcctgagctc gccctcattg cagagtactg acgggctcag 1440 cgtgaccaat ccttccccgc ccctcgagtc agaaaatgtg atgtatcgat gccaaacgcc 1500 cttaaaaaca ggagtaacga gggcaaaggc ctgcctaatg cacagttaat tgcgtgacgt 1560 gagtgtgtgc gcgcgtgcgt gcggatctac tggatcatat ctgtgaaagt gtactagcgt 1620 gactgcgtcc gttcaattgc atgtttctct atgtccatgc tggctttaac gaatatgatc 1680 acaacacatt taaaaaaaga ggtggggagt gccagcgtca acgaatcaga tgtttactgc 1740 gaagccttaa ttgaatttta taggctatca aacgctagat ccagtcatct gtgcttacat 1800 tgtagaaagc ttggttttac attgcaacag cactatatac ttgacgccaa tagacatttt 1860 tgtcatgttc tgttaatatc aaattttttt tatatacata tctaccgttt ttttttaaag 1920 agaaattgtc tagatgatgt tattgcagtt taaatggatg tattttaaaa ctgtccttca 1980 cctttttttg taatcttatg gaatacatct caccttggtg gtgtgtaatg gttgtttttt 2040 ttcaacagtc ccatggctat acagaatgct gacaagttgc atgaattacc cagactaccc 2100 tgtaaataac tggcctttta aacaatgctt tagctttgtc ccctaaaaga cgcctgtggt 2160 tccaatggaa acactcttct tttctggcag ctattagttg tttttgttca ttttaagtga 2220 tttttaaaaa aaaatcttca atggtgtggg acactacaga catataaata aaaaaaaagt 2280 aaaaaaaaaa aaaaaaaa 2298 // |
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