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EBI DbfetchID BC046746; SV 1; linear; mRNA; STD; VRT; 2515 BP. XX AC BC046746; XX DT 24-FEB-2003 (Rel. 74, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Xenopus laevis cysteinyl-tRNA synthetase, mRNA (cDNA clone MGC:53887 DE IMAGE:5543220), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-2515 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2515 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2515 RA Klein S., Strausberg R.; RT ; RL Submitted (10-FEB-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998M1312243Q. DR ImaGenes; IRAKp961I1896Q. DR ImaGenes; IRBHp990G118D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, CC Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, CC Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo CC Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven CC Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline CC Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, CC Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, CC George Yang, Scott Zuyderduyn, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 96 Row: i Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Similarity but not CC identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2515 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb4" FT /clone="MGC:53887 IMAGE:5543220" FT /tissue_type="Embryo, stage 31/32, Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..2515 FT /gene="cars-prov" FT /note="synonym: MGC53887" FT CDS 9..2252 FT /codon_start=1 FT /product="cars-prov protein" FT /db_xref="GOA:Q7ZWR2" FT /db_xref="HSSP:1LI5" FT /db_xref="InterPro:IPR002308" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR015803" FT /db_xref="InterPro:IPR015804" FT /db_xref="UniProtKB/Swiss-Prot:Q7ZWR2" FT /protein_id="AAH46746.1" FT /translation="MTESWEQGKGRRTQPPWSAPNTNEQPGLRLYNSLTRSKELFFPQV FT GRKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYFKYDVFYCMNITDIDDKIIKR FT ARQRHLFQQYRESNPPHSDLLQDVNTALIPFLQRISETNDPDKKQMLERIQTAVSAALL FT PLQDALNKNTGAEELQKHSQVLMEAAVDLLSDWLDEKHGAQIADNSIFSQLPKYWEGEY FT HKDMEALNVLTPDVLTRVSEYVPEIVAFVQKIVDNGYGYVSNGSVYFSTAKFHDSENHF FT YAKLVPEAVGDQKALQEGEGDLSISADRLSEKQSPNDFALWKASKPGEPSWESPWGKGR FT PGWHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFDNDHWVRYFLHTGHL FT TIAGCKMSKSLKNFITIKDALQKNTARQLRLAFLMHSWKDTLDYSNNTMESAVQYEKFM FT NEFFLNVKDLLRAPTDITGQFVKWEVLEIELNNCFYSKKAAIHEALCDNIDTRTVMEEM FT RSLVSQCNSYIASKKVAKQFPNRMLLRSISSYLTSMLKVFGAIEGEEVIGFPIGGSENS FT MNLESTVMPYLQVLSQFREGVRQIARQHKVTEVLQLSDLLRDDILPELGVRLEDHEGLP FT TVVKLVDRETLLKEKEEKRKAEEEKQRKKEEAARKKQQQEAAKLEKMKISPSQMFTLET FT DKYSQFDESGFPTHDTEGKELSKGQTKKLRKLFEVQEKLHKEYLQMVQNGTTA" FT misc_feature 129..347 FT /note="tRNA-synt_1e; Region: tRNA synthetases class I (C). FT Other tRNA synthetase sub-families are too dissimilar to be FT included. This family includes only cysteinyl tRNA FT synthetases" FT misc_feature 639..1886 FT /note="tRNA-synt_1e; Region: tRNA synthetases class I (C). FT Other tRNA synthetase sub-families are too dissimilar to be FT included. This family includes only cysteinyl tRNA FT synthetases" XX SQ Sequence 2515 BP; 784 A; 527 C; 587 G; 617 T; 0 other; ggagcacaat gacggaatca tgggaacaag gtaaaggaag gcgcacccag ccaccctggt 60 ctgcacccaa cacaaatgaa caacctggac tgcgccttta caacagcctg actcgcagca 120 aggagctgtt tttcccccaa gttggtagaa aagtcacgtg gtattgctgt ggccccactg 180 tgtatgatgc ctcccacatg ggacatgcca ggtcgtacat atcctttgat atccttagga 240 gagtgctgag ggactacttc aaatatgatg tattttactg catgaacatt actgatattg 300 atgacaagat aataaagaga gccagacaga ggcatttatt tcagcaatac agagagagta 360 atccaccaca ctccgatctg cttcaggatg tcaacactgc actaatacca ttcctacaaa 420 gaattagcga gaccaacgac ccagataaaa agcagatgct ggagaggatc caaactgctg 480 ttagtgccgc ccttcttcct cttcaggatg cattgaacaa aaatacagga gccgaggaac 540 tccagaaaca cagtcaggtg ctgatggaag cagcagtaga tttgctgtcg gactggttgg 600 atgagaaaca tggggctcaa atcgcagaca attcaatttt ctctcaactt ccaaaatact 660 gggaaggcga ataccataaa gacatggagg ccctgaatgt tctgacacca gatgtactga 720 cccgggtcag tgaatatgtg ccggaaattg tagcatttgt gcaaaaaatt gtggataacg 780 gttatgggta tgtgtctaat ggatctgtgt actttagtac tgcaaagttt catgacagtg 840 aaaatcattt ttatgccaaa ctggttcccg aagctgttgg agatcagaag gcccttcagg 900 aaggagaagg ggatctgagt atctctgctg atcgattaag tgagaagcaa tctcccaatg 960 acttcgcttt gtggaaagct tcaaaacctg gtgaaccttc ctgggaatcg ccatggggaa 1020 agggtcggcc tggttggcac attgagtgtt cagcaatggc aggatctatt cttggtgaat 1080 caatggatat ccatgggggt ggatttgatc tccgatttcc ccatcacgac aacgaattgg 1140 cacagtctga ggcttacttt gataatgatc actgggtgcg ctatttcctc catactggtc 1200 acctgactat tgcaggctgt aaaatgtcca aatccttgaa gaacttcatc accatcaaag 1260 atgcacttca gaaaaataca gcccgtcagc tgcgcctggc attcctcatg cactcctgga 1320 aggacaccct ggattattcc aacaacacaa tggagtcggc tgttcagtat gagaagttta 1380 tgaatgaatt cttcttaaac gtgaaagatc ttctcagagc tcctactgat atcacagggc 1440 agtttgtgaa gtgggaagtt ctggaaatag aactcaacaa ttgtttttat agcaaaaagg 1500 cagccattca tgaagctctg tgtgataaca tcgatacacg cactgtcatg gaagaaatga 1560 ggtcactggt cagtcagtgc aactcctaca tagccagtaa gaaggtagca aaacagtttc 1620 ccaacagaat gctactgaga agcatcagct cttatcttac ttcaatgcta aaggtgtttg 1680 gagcaatcga gggtgaagaa gtgattggtt ttcccattgg tggaagtgaa aacagcatga 1740 atcttgaaag cacagttatg ccatatcttc aggttctgtc acagttcaga gaaggggtcc 1800 gacagattgc ccggcagcac aaagtgactg aagtcttaca actcagtgat ttgctgcgtg 1860 atgacatcct tcctgaactt ggagtgcggc tggaggacca tgaagggctt cccactgttg 1920 tcaaactggt cgaccgagag actttactga aggagaagga agagaagagg aaggctgagg 1980 aagagaagca gaggaagaag gaagaagcag caaggaaaaa acagcagcag gaggcagcca 2040 agttagagaa gatgaagatc tctcccagcc aaatgtttac actggaaacg gacaaatact 2100 cccagtttga tgaaagcggt ttccccactc atgatacaga gggcaaggaa ttgagcaaag 2160 ggcaaacaaa gaaactccgc aaactctttg aagtgcaaga aaagttacat aaagaatatt 2220 tgcaaatggt ccaaaatggg accacagctt gaggatttgt agagtttgtg ccgggccatt 2280 ggttttgtag cagaaaatgt gcgttttcat attcccacca tgcacatatt tattactctg 2340 taaataaatg gcaacgccat taaattaccg ccaatatgaa caccacaatt aacctttcat 2400 ttggggtatt ttctagctct gcttgtgtct catagccctc agtataaact tcttgttccc 2460 aactaccaat cacaaataaa ttctttataa attgtcaaaa aaaaaaaaaa aaaaa 2515 // |
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