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EBI DbfetchID BC046050; SV 1; linear; mRNA; STD; VRT; 2649 BP. XX AC BC046050; XX DT 11-FEB-2003 (Rel. 74, Created) DT 16-JUL-2006 (Rel. 88, Last updated, Version 11) XX DE Danio rerio RAD54-like (S. cerevisiae), mRNA (cDNA clone MGC:56289 DE IMAGE:5602782), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2649 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2649 RG NIH MGC Project RA ; RT ; RL Submitted (31-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000016117; Danio_rerio. DR Ensembl-Gn; ENSDARG00000018623; Danio_rerio. DR Ensembl-Gn; ENSDARG00000021172; Danio_rerio. DR Ensembl-Gn; ENSDARG00000022728; Danio_rerio. DR Ensembl-Gn; ENSDARG00000030641; Danio_rerio. DR Ensembl-Gn; ENSDARG00000032639; Danio_rerio. DR Ensembl-Gn; ENSDARG00000037362; Danio_rerio. DR Ensembl-Gn; ENSDARG00000041100; Danio_rerio. DR Ensembl-Gn; ENSDARG00000052379; Danio_rerio. DR Ensembl-Gn; ENSDARG00000054060; Danio_rerio. DR Ensembl-Gn; ENSDARG00000055659; Danio_rerio. DR Ensembl-Gn; ENSDARG00000078249; Danio_rerio. DR Ensembl-Tr; ENSDART00000011785; Danio_rerio. DR Ensembl-Tr; ENSDART00000024350; Danio_rerio. DR Ensembl-Tr; ENSDART00000025810; Danio_rerio. DR Ensembl-Tr; ENSDART00000039490; Danio_rerio. DR Ensembl-Tr; ENSDART00000044658; Danio_rerio. DR Ensembl-Tr; ENSDART00000050753; Danio_rerio. DR Ensembl-Tr; ENSDART00000054366; Danio_rerio. DR Ensembl-Tr; ENSDART00000060194; Danio_rerio. DR Ensembl-Tr; ENSDART00000074220; Danio_rerio. DR Ensembl-Tr; ENSDART00000076193; Danio_rerio. DR Ensembl-Tr; ENSDART00000078051; Danio_rerio. DR Ensembl-Tr; ENSDART00000099769; Danio_rerio. DR Ensembl-Tr; ENSDART00000110290; Danio_rerio. DR Ensembl-Tr; ENSDART00000111389; Danio_rerio. DR ImaGenes; IMAGp998O0712396Q. DR ImaGenes; IRAKp961N15103Q. DR ImaGenes; IRBOp991C1121D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano CC cDNA Library Preparation: Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 103 Row: n Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 28277972. XX FH Key Location/Qualifiers FH FT source 1..2649 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="Sugano SJD adult male" FT /clone="MGC:56289 IMAGE:5602782" FT /tissue_type="Whole body, adult male" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2649 FT /gene="rad54l" FT /note="synonyms: MGC56289, zgc:56289" FT CDS 259..2475 FT /codon_start=1 FT /gene="rad54l" FT /product="RAD54-like (S. cerevisiae)" FT /db_xref="GOA:Q7ZV09" FT /db_xref="InterPro:IPR000330" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR014021" FT /db_xref="PDB:1Z3I" FT /db_xref="UniProtKB/TrEMBL:Q7ZV09" FT /db_xref="ZFIN:ZDB-GENE-040426-968" FT /protein_id="AAH46050.1" FT /translation="MRRSLAPSQVAKRKQGPDSDDEEDWEPDMEPQSKRDCREKYISPY FT RKPLTPLTNRPVCADGNEHEAFIRKILSKPFKIPIPNYTGVLGLRALGLRRAGVRKALH FT DPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVT FT GRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYN FT EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHK FT GKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGI FT LGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLP FT VKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY FT EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYT FT QTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL FT IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL FT SSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCT FT CDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQRGVV" XX SQ Sequence 2649 BP; 763 A; 594 C; 655 G; 637 T; 0 other; ctgtgaccta tgcgcgggat tctcaaacat aatgtcggtg tttaataaca acaacagctg 60 gatctgcttc agtttatgtt tcctcaaata ttatattcat tgtagtttaa aacgacgttt 120 tgactaagta tttttgttaa acggcgcagt tattatttaa tgttgtcgag cgctcctata 180 tagctgttag ctaaaacgac aaagatgcac gtttatttgg acgtatttat ttaatttgga 240 tttaatttct gatccagaat gaggagaagt ctagcgccaa gtcaggtggc caaaagaaaa 300 caggggccag attcagacga tgaggaggac tgggagcctg acatggaacc acagagcaag 360 agagactgtc gagaaaagta catctcccct tacagaaaac ccctgacccc gctgaccaac 420 agacccgtct gtgctgatgg caatgagcat gaagccttca ttcgcaagat cttatccaaa 480 ccatttaaaa ttcctattcc aaattacaca ggcgttttgg gtttgcgggc tcttggtctg 540 agacgagctg gtgtgaggaa agctctgcac gacccgtttg aagacggagc tctggttctg 600 tatgagcctc cggccatcag cgctcatgac ctgatcaaag cagacaagga gaagctgcca 660 gtgcatgtgg ttgtagatcc cgtgctcagt aaagtgcttc gaccacatca gcgagagggt 720 gtgaagttct tgtgggattg tgtgacggga cgacggattg agaactccta cggctgtatt 780 atggcggatg agatgggtct gggaaaaaca ttacaatgca tcactctcat ctggacttta 840 ctgaagcaga gtccagactg caaacctgag atcgataagg tcatcgtggt ctctccgtcc 900 agcctggtga gaaactggta caatgaagtg ggcaagtggc tcggtggacg cgtgcagcct 960 gtggccattg acggaggctc caaagacgag atcgacagca aacttgtaaa cttcatctct 1020 cagcaaggca tgagaatacc aactccaatt ctgatcattt cctatgaaac cttccgtctc 1080 cacgctgaag tcctgcacaa aggcaaagtc ggactggtca tctgtgatga gggtcaccgg 1140 ctgaaaaact cagacaatca gacatacctg gctctgaact ccatgaatgc ccagaggaga 1200 gtgctgatat ctggaactcc cattcagaac gacctgctgg agtatttcag cttggtgcac 1260 tttgtaaact ctggcatcct cggcacagct caggagttta agaaacgctt cgagattcct 1320 atcctgaagg gtcgtgatgc agacgccagt gataaagaca gagctgccgg agagcagaaa 1380 ctccaggagc tcatcagcat tgtcaacagg tgtttgattc gaaggacttc agatattctt 1440 tccaagtatc tgccagtgaa gattgaacaa gtagtctgct gcaatctgac tcctctgcag 1500 aaagagctgt acaagttatt tctgaagcag gccaaacctg tggagagtct gcagacgggg 1560 aagatctccg tgtcttctct gtcctccatc acctcgctaa agaagctctg caaccatcct 1620 gccctgatct atgagaagtg tctgacagga gaagagggat ttgacggagc actggatctc 1680 ttcccacaga attattcaac caaagccgtc gaaccacagc tctcagggaa gatgctggtg 1740 ttggattata tcttggcgat gaccagaaca acaaccagtg ataaagtggt tctggtctcc 1800 aactacacac agactttgga tctgtttgaa aaactgtgtc gaaaccgaag atacctttat 1860 gttaggctgg atgggacgat gtccatcaag aagagagcca agattgtgga gagattcaac 1920 aacccctcta gcccagagtt catcttcatg ctgagcagta aagctggcgg ctgtggcctc 1980 aatctgattg gtgcaaaccg attggtgatg ttcgacccgg actggaatcc agccaatgac 2040 gagcaggcga tggctagagt gtggagagac ggacagaaga agacctgcta catctacaga 2100 ctgctgtcga cgggaaccat agaggagaag atcctccaga gacaggctca taagaaggcc 2160 ttgagcagct gtgtagtgga tgaggagcag gacgtggaga gacatttctc tctcggagag 2220 cttcgggaac tcttctcgct caatgagaaa accctcagcg acacgcatga caggtttcgc 2280 tgcaggcggt gtgtgaatgg ccgacaggtt cgtcctcctc ctgatgattc ggactgtacc 2340 tgtgatctct ccaactggca tcactgcgct gataagcgag gcctgagaga cccggtgctg 2400 caggcttcat gggatgcagc agtctctttc gtcttccacc agcgctcaca cgaggaccag 2460 agaggagttg tctgaactgc tcaaaaaagc ctaagttcat atgctagcac tcattcattt 2520 ctttattcat gtatttattt tgcacaaaca aattgattat tcttttctgg gttattaaaa 2580 ggaactaaaa cccaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2640 aaaaaaaaa 2649 // |
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