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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC045981; SV 1; linear; mRNA; STD; VRT; 979 BP.
XX
AC   BC045981;
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DT   11-FEB-2003 (Rel. 74, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 12)
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DE   Danio rerio vacuolar protein sorting 29 (yeast), mRNA (cDNA clone MGC:56191
DE   IMAGE:5413757), complete cds.
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KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-979
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-979
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (31-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000069521; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000101246; Danio_rerio.
DR   ImaGenes; IMAGp998K0612055Q.
DR   ImaGenes; IRAKp961J18103Q.
DR   ImaGenes; IRBOp991F1220D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Sumio Sugano
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 103 Row: j Column: 18
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 48734905.
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FH   Key             Location/Qualifiers
FH
FT   source          1..979
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="Sugano SJD adult male"
FT                   /clone="MGC:56191 IMAGE:5413757"
FT                   /tissue_type="Whole body, adult male"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..979
FT                   /gene="vps29"
FT                   /note="synonyms: fb06g05, wu:fb06g05, zgc:56191, zgc:86638"
FT   CDS             106..654
FT                   /codon_start=1
FT                   /gene="vps29"
FT                   /product="vacuolar protein sorting 29 (yeast)"
FT                   /db_xref="GOA:Q7ZV68"
FT                   /db_xref="InterPro:IPR000979"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7ZV68"
FT                   /db_xref="ZFIN:ZDB-GENE-030131-8764"
FT                   /protein_id="AAH45981.1"
FT                   /translation="MLVLVLGDLHIPHRCNTLPAKFKKLLVPGKIQHILCTGNLCTKES
FT                   YDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQR
FT                   QLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVTY
FT                   VYQLIGDDVKVERIEYKKS"
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SQ   Sequence 979 BP; 299 A; 215 C; 200 G; 265 T; 0 other;
     aaagtttact tatttctctt gcgggatctg gcaacatcga gtttctggcc ttacgaatca        60
     acatcagctt cctgaggtcc gtttcaaaca cgcagctgga caaaaatgct ggtcctcgtg       120
     ttaggtgacc tgcacattcc ccaccgatgc aacaccctgc ctgccaaatt caaaaaattg       180
     ctggtgcctg gcaagattca gcacatccta tgcacaggaa acctctgtac gaaggagagc       240
     tacgactacc tgaaaacact cgccggagac gtccacatcg tcagaggaga ctttgacgag       300
     aacttgaatt acccggagca gaaggttgtg acagtggggc agtttaaaat cggtttgatc       360
     cacggacacc aagtgatccc atggggagac atggcaagct tggcactgct tcaaaggcag       420
     ctggatgtgg atatcctcat ttctggccac acacacaaat ttgaggcttt cgagaatgag       480
     aataaatttt atataaatcc tggatctgca acaggggcct atagtgcact ggaaagcaac       540
     atcacgccat catttgtttt gatggacatt caagcatcca cagtggtaac gtatgtctat       600
     caacttattg gagacgacgt caaagtcgag agaatcgaat acaaaaagtc ttaaagggcg       660
     aagatactgt ccgctgcctt ctttcaggat gctaatcatg tcattccctc tcacccgaat       720
     gtcaccatca tacaaatgct gtatcataac gttacgctat attttaatgt aatatataat       780
     actgtttata tgtcaccagg atgtcatcgc ttgtggtttc agcagatggt tgtttaaatg       840
     caataatgct gcattattcg catattagag agaattagtc ttataaatat gttttgtgcc       900
     ctattaattt ttcaaggcct atgttgagtc atctttcata aaataaaacc ccacatcaca       960
     tgaaaaaaaa aaaaaaaaa                                                    979
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