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EBI DbfetchID BC045887; SV 1; linear; mRNA; STD; VRT; 1715 BP. XX AC BC045887; XX DT 11-FEB-2003 (Rel. 74, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Danio rerio zgc:56053, mRNA (cDNA clone MGC:56053 IMAGE:3820333), complete DE cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1715 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1715 RG NIH MGC Project RA ; RT ; RL Submitted (31-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000046129; Danio_rerio. DR Ensembl-Tr; ENSDART00000080460; Danio_rerio. DR ImaGenes; IMAGp998B149114Q. DR ImaGenes; IRAKp961D07103Q. DR ImaGenes; IRBOp991B1218D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 103 Row: d Column: 7 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 28279663. XX FH Key Location/Qualifiers FH FT source 1..1715 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="MGC:56053 IMAGE:3820333" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1715 FT /gene="zgc:56053" FT CDS 78..1445 FT /codon_start=1 FT /gene="zgc:56053" FT /product="zgc:56053" FT /db_xref="GOA:Q7ZVF1" FT /db_xref="HSSP:1HJX" FT /db_xref="InterPro:IPR001223" FT /db_xref="UniProtKB/TrEMBL:Q7ZVF1" FT /db_xref="ZFIN:ZDB-GENE-040426-1994" FT /protein_id="AAH45887.1" FT /translation="MTKLTILAGLGILLSLQIVSSTKLVCYMTNWSQYRPGNGKFLPEN FT IDPFLCTHVVYALATISYDNQITTIEWNDVDLYKSMNELKKVNPALKTQLSVGGLVNGV FT SPYINMVATPENRKAFIRNALLFLRLHEFDGMDIDWQYPGHNGSPPQDKQRLTTFIKEM FT RDAIEQEAIDTKKTPLLLSIKVSAIKTTIENAYEAKEVASLVDFVTIMSYDYHGHWDPI FT TGHNSPLFRSSFDTGSIVHHNINSSLEFWLGSGAPADRLLLGLPTYGRTFMLSTSQTGL FT GAPANGPADAGPYTREAGFWSYYEICPMESSVPIHWIDEQMVPYAVQGRAWVGFDNQES FT ITAKVQWLNSLKLGGASVWTLDFDDFAGRFCYNGAYPLVNHLRNSLGFPPKPTTTPRPT FT TTADPINSFCVGKPDGLYPHPTDASKYFHCFRGNTYLQQCQPGLVFVDACKCCDWP" XX SQ Sequence 1715 BP; 480 A; 430 C; 348 G; 457 T; 0 other; accaaactgg ccattctcag tgcagctgac acagctcact ttatttctca agcatactgg 60 tttggatctg gatcaaaatg actaagttga ctatattagc aggactgggc atcttgctgt 120 cattacagat tgtgtcctcc acaaaactgg tgtgctacat gaccaactgg tcccagtaca 180 gacctggaaa tgggaagttc ttgccagaaa acatcgaccc attcctctgc actcatgtgg 240 tttacgctct ggcaaccatc agctatgata atcagatcac caccattgaa tggaatgatg 300 tcgatctgta caagtcaatg aacgagctca agaaagtaaa tcctgcactg aagacacagc 360 tgtctgttgg aggattggtc aatggtgtca gtccatacat taacatggtg gcgactccag 420 aaaaccgcaa agctttcatc cgcaatgcat tattgttcct gcggctccat gagtttgacg 480 gcatggacat tgactggcag tatcctggtc ataatggaag tccaccacag gacaagcaga 540 ggctgactac attcatcaag gaaatgagag atgcaattga acaagaggcc atcgacacaa 600 agaaaactcc tctgcttctc tccatcaaag tgtccgccat caaaaccact atcgaaaatg 660 cttacgaggc caaagaggtt gcaagtttgg tggactttgt gaccatcatg tcttatgact 720 atcatggcca ctgggacccc ataacaggac acaacagccc tcttttccgt agctcctttg 780 acaccggaag cattgttcac cacaatatca attcatcttt ggaattctgg cttggcagtg 840 gagctcctgc tgacaggctg ctgctgggtt tacctacata tggacgcaca ttcatgctct 900 ctacttcaca aactggtctc ggggctccag ccaatggtcc cgctgatgcc ggcccctaca 960 cacgcgaagc aggcttctgg tcctattatg agatttgccc catggaatca agcgtcccca 1020 ttcattggat tgatgaacag atggtgccct atgcagttca aggacgagct tgggttggat 1080 ttgacaacca agaaagcatt accgctaagg tgcagtggct taactcctta aaactgggcg 1140 gagcctcagt gtggacatta gattttgacg attttgctgg ccgcttctgt tacaacggag 1200 cttaccctct tgtcaaccat ctgcgaaact cactgggttt cccacccaag cccaccacta 1260 caccacgtcc caccacgacc gctgacccca tcaactcttt ctgtgtgggt aaaccagacg 1320 gcctgtaccc acaccctact gatgccagca aatacttcca ctgtttccgc ggaaacacat 1380 acctgcagca atgccaacct ggtctggtct ttgttgacgc ttgtaaatgt tgtgattggc 1440 cttgaatgta agtcaataca gcagtccaga cttcaactat gatgtatcac cttgtcttcc 1500 atctatccaa gctcatcatc tgaaagaaac acaataataa tgataataaa agtgaataat 1560 ttttatgcat agcagtatgg agttctttgt aaagtactgg ttatatattc actcacatct 1620 agttttcctc ttgttgtgca acaaaactat gtcctctttt ttctttcact ttaaataaag 1680 atatttatga caatctgaaa aaaaaaaaaa aaaaa 1715 // |
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