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EBI DbfetchID BC045773; SV 1; linear; mRNA; STD; HUM; 1551 BP. XX AC BC045773; XX DT 11-FEB-2003 (Rel. 74, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Homo sapiens UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, DE polypeptide 1, mRNA (cDNA clone MGC:50983 IMAGE:4837872), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-1551 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1551 RG NIH MGC Project RA ; RT ; RL Submitted (31-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000087415. DR Ensembl-Gn; ENSG00000086062; Homo_sapiens. DR Ensembl-Tr; ENST00000379731; Homo_sapiens. DR H-InvDB; HIT000052975. DR ImaGenes; IMAGp998P0110770Q. DR ImaGenes; IRAKp961K0890Q. DR ImaGenes; IRATp970E1162D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Miklos Palkovits, M.D., Ph.D. CC cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki CC Toshiyuki and Piero Carninci (RIKEN) CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 90 Row: k Column: 8 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 13929461. CC Differences found between this sequence and the human reference CC genome (build 35) are described in misc_difference features below CC and these differences were also compared to chimpanzee genomic CC seqeunces available as of 09/15/2004 00:00:00. XX FH Key Location/Qualifiers FH FT source 1..1551 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_97" FT /clone="MGC:50983 IMAGE:4837872" FT /tissue_type="Testis" FT /note="Vector: pBluescriptR" FT /db_xref="taxon:9606" FT gene 1..1551 FT /gene="B4GALT1" FT /note="synonyms: B4GAL-T1, GT1, GTB, beta4Gal-T1" FT misc_difference 85 FT /gene="B4GALT1" FT /note="'T' in cDNA is 'C' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT CDS 188..865 FT /codon_start=1 FT /gene="B4GALT1" FT /product="B4GALT1 protein" FT /db_xref="GOA:Q86XA6" FT /db_xref="HGNC:924" FT /db_xref="HSSP:1PZT" FT /db_xref="InterPro:IPR003859" FT /db_xref="UniProtKB/TrEMBL:Q86XA6" FT /protein_id="AAH45773.1" FT /translation="MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGR FT DLSRLPQLVGVSTPLQGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVV FT DSGPGPASNLTSVPVPHTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKM FT GGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQYEKIRR FT LLW" FT misc_difference 784 FT /gene="B4GALT1" FT /note="'T' in cDNA is 'C' in the human genome; no amino FT acid change. The chimpanzee genome agrees with the cDNA FT sequence, suggesting that this difference is unlikely to be FT due to an artifact." FT misc_difference 866 FT /gene="B4GALT1" FT /note="'G' in cDNA is 'A' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 1167 FT /gene="B4GALT1" FT /note="'G' in cDNA is 'A' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 1219 FT /gene="B4GALT1" FT /note="'C' in cDNA is 'T' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 1261 FT /gene="B4GALT1" FT /note="'G' in cDNA is 'T' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 1404 FT /gene="B4GALT1" FT /note="'A' in cDNA is 'G' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 1536..1551 FT /gene="B4GALT1" FT /note="polyA tail: 16 bases do not align to the human FT genome." XX SQ Sequence 1551 BP; 291 A; 465 C; 482 G; 313 T; 0 other; gcctcgggcg gcttctcgcc gctcccaggt ctggctggct ggaggagtct cagctctcag 60 ccgctcgccc gcccccgctc cgggtcctcc cctagtcgcc gctgtggggc agcgcctggc 120 gggcggcccg cgggcgggtc gcctcccctc ctgtagccca cacccttctt aaagcggcgg 180 cgggaagatg aggcttcggg agccgctcct gagcggcagc gccgcgatgc caggcgcgtc 240 cctacagcgg gcctgccgcc tgctcgtggc cgtctgcgct ctgcaccttg gcgtcaccct 300 cgtttactac ctggctggcc gcgacctgag ccgcctgccc caactggtcg gagtctccac 360 accgctgcag ggcggctcga acagtgccgc cgccatcggg cagtcctccg gggagctccg 420 gaccggaggg gcccggccgc cgcctcctct aggcgcctcc tcccagccgc gcccgggtgg 480 cgactccagc ccagtcgtgg attctggccc tggccccgct agcaacttga cctcggtccc 540 agtgccccac accaccgcac tgtcgctgcc cgcctgccct gaggagtccc cgctgcttgt 600 gggccccatg ctgattgagt ttaacatgcc tgtggacctg gagctcgtgg caaagcagaa 660 cccaaatgtg aagatgggcg gccgctatgc ccccagggac tgcgtctctc ctcacaaggt 720 ggccatcatc attccattcc gcaaccggca ggagcacctc aagtactggc tatattattt 780 gcatccagtc ctgcagcgcc agcagctgga ctatggcatc tatgttatca accagtatga 840 aaaaataaga agactcctgt ggtgagggct tcgcctggtc tgttctgctc tggaggtggc 900 agcgcatggt ggttagtccc agcatcttcc tggagatttg agcgtgagac gtgctggctg 960 tgtgggctgt gccacctgag gaggattggc cagtcataag gactcagcct ggttgctgaa 1020 tccagctggg gaccttgacc ccagtgactg gcttttcagc ggctacctgt tctcgagaca 1080 aatgctgtcc tcccctaagg agtctgggct gtggcaaagc tatgacatag gtacaaccgt 1140 ccttttgcca ggtggggctt aggtggggaa gttgaagcct ggactcagtc aagatctcag 1200 gactgggagc aaggagcccc ttactcccag ggtgcccact tggttcccac tgactgttgg 1260 gggaaactag gggctgagct ggaggctttt tagaggaaga aatgacaagc tgggggctgg 1320 attatccctg ggggtgaaaa tggagtcagc tagataggtt atgtcttgaa ggagaggagg 1380 gtcccctggt gtcaggaagc agaacctgaa ctccatgtta gaccctggat tggagagtgg 1440 gcaggacact tgggagagac aggacttggt actggcgagg gtactaccac acccattctg 1500 ggagtggact atagagaaat aaatcctaaa agtggaaaaa aaaaaaaaaa a 1551 // |
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