 |
|
EBI DbfetchID BC045247; SV 1; linear; mRNA; STD; VRT; 1836 BP. XX AC BC045247; XX DT 01-FEB-2003 (Rel. 74, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Xenopus laevis cyclin-dependent kinase 9 (CDC2-related kinase), mRNA (cDNA DE clone MGC:53831 IMAGE:5542442), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-1836 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-1836 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-1836 RA Klein S., Strausberg R.; RT ; RL Submitted (27-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998M0312241Q. DR ImaGenes; IRAKp961D1596Q. DR ImaGenes; IRBHp990H067D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, CC Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, CC Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo CC Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven CC Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline CC Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, CC Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, CC George Yang, Scott Zuyderduyn, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 96 Row: d Column: 15 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Similarity but not CC identity to protein. XX FH Key Location/Qualifiers FH FT source 1..1836 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb4" FT /clone="MGC:53831 IMAGE:5542442" FT /tissue_type="Embryo, stage 31/32, Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..1836 FT /gene="cdk9-prov" FT /note="synonym: MGC53831" FT CDS 250..1380 FT /codon_start=1 FT /product="cdk9-prov protein" FT /db_xref="GOA:Q7ZX42" FT /db_xref="HSSP:1H4L" FT /db_xref="InterPro:IPR002290" FT /db_xref="UniProtKB/Swiss-Prot:Q7ZX42" FT /protein_id="AAH45247.1" FT /translation="MVKNYDSVEFPYCDEVSKYERLAKIGQGTFGEVFKAKHRQTGKKV FT ALKKVLMENEKEGFPITALREIKILQLLKHENVVHLIEICRNKISPTANQYNRCKGTIF FT LVFDFCEHDLAGLLSNAHVKFTVAEIKKVMQMLLNGLYYIHRNKILHRDMKAANVLITR FT DGVLKLADFGLARAFSLAKNSQPNKYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCI FT MAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPNVDKYELYQKLELPKGQKRKVKE FT RLKAYVKDVCALDLIDKLLILDPAQRTDSDEALNHDFFWSDPMPSDLKNMLSTHNQSMF FT EYLAPPRRRGGHMPQQPANQARNPAATNQSEFDRVF" FT misc_feature 301..1206 FT /note="S_TKc; Region: Serine/Threonine protein kinases, FT catalytic domain. Phosphotransferases of the serine or FT threonine-specific kinase subfamily. The enzymatic activity FT of these protein kinases is controlled by phosphorylation FT of specific residues in the activation segment of the FT catalytic domain, sometimes combined with reversible FT conformational changes in the C-terminal autoregulatory FT tail" XX SQ Sequence 1836 BP; 541 A; 414 C; 448 G; 433 T; 0 other; gacgggggga gtgggttaaa aacacacaag cttcttctag aggcgcgcag aagcggggag 60 gcaagtgaaa gaacagccca gaatctctca tccggctccc ccgtagcagt gcgaggtgtt 120 gtggccttgt ccgagccgtc aggcagcctg aactcgtcag ctcagcaccg ggaaaggccg 180 gggcccgtcg gcctgtgccc ggaatccgat tcccgaggac cttccggttc agagccccct 240 ccttccgcca tggtaaagaa ctacgactct gttgaattcc cttattgcga tgaggtctcc 300 aagtacgagc ggctcgccaa gatcggccag ggcacattcg gggaagtgtt caaggccaaa 360 catcggcaga cggggaagaa agttgcactc aaaaaagttc tgatggaaaa tgagaaggaa 420 gggttcccta tcacagctct gcgagagatc aaaatcctgc agctgttgaa acatgagaat 480 gtggttcacc ttatagagat ttgtcggaat aaaatttctc ccacagccaa ccaatacaat 540 agatgcaaag ggactatttt cctggtgttc gacttttgcg agcacgatct agcaggattg 600 ctgagcaacg ctcacgtcaa gtttaccgtc gccgagatca agaaggtgat gcagatgctg 660 ctcaatggcc tctactacat tcacaggaat aagatcctgc acagagacat gaaggcagca 720 aacgtgctga tcaccagaga cggggtgttg aaacttgcag actttgggct tgccagagca 780 ttcagccttg ccaagaacag ccagccaaac aagtacacca atcgggttgt tacactctgg 840 tatcgacccc ctgagctgct tctgggggag cgtgattatg gccctcccat cgatttgtgg 900 ggagcggggt gcatcatggc agagatgtgg accagaagcc ccattatgca ggggaataca 960 gagcagcatc agctgacact catcagccaa ttgtgcggct ccatcacacc agaggtgtgg 1020 ccaaatgtgg acaaatacga gttgtaccag aaacttgagc tgcccaaagg ccagaagagg 1080 aaggtgaagg aaaggctgaa ggcttatgtg aaagatgtct gtgcactgga tcttatagac 1140 aagctgttga ttttggaccc agcgcagaga acagacagcg acgaagctct gaaccacgat 1200 ttcttctggt ccgatccaat gccttctgac ctaaagaaca tgctctctac tcacaatcag 1260 tccatgtttg aatacttggc acctcctagg agaagaggcg gacacatgcc ccaacagcca 1320 gccaatcagg cacggaatcc tgctgccacc aaccaatcag aatttgacag agtcttctaa 1380 gacataaatt cttatttatg ggagagtgga aacttttttt cttttttttt taactatata 1440 tatatttttc aattcctttt tttaagaatc tgtataacgg tagtatgggg agcaaggact 1500 acagttgaca tgtacagctg catacgtttt agggtatcaa tattcagaag aatggcatta 1560 atgacatagg ataattcttt tctatccaag tgaaacagaa ctttaactgt gagatactag 1620 atctaaaaaa aaaaaaagat tgctcttgtt cagacaggct gatacaccct gccatgtagc 1680 tactactgct acttacagaa gggctggtca gtagacgcgt tgtgaactga agaatcttca 1740 aaaaatgctt tctgtgttgc tgtacctatg tattttgata gggaatgtaa ataaaattta 1800 tgttctccta aaaaaaaaaa aaaaaaaaaa aaaaaa 1836 // |
|