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EBI DbfetchID BC045131; SV 1; linear; mRNA; STD; VRT; 2091 BP. XX AC BC045131; XX DT 11-FEB-2003 (Rel. 74, Created) DT 27-MAY-2005 (Rel. 83, Last updated, Version 4) XX DE Xenopus laevis similar to DE UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)- DE galactosylglucosylceramide N-acetylgalactosaminyltransferase (GalNAc-T), DE mRNA (cDNA clone MGC:53523 IMAGE:5572671), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-2091 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2091 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2091 RA Klein S., Strausberg R.; RT ; RL Submitted (27-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998H1612318Q. DR ImaGenes; IRAKp961P1897Q. DR ImaGenes; IRBHp990A0712D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 97 Row: p Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2091 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb4" FT /clone="MGC:53523 IMAGE:5572671" FT /tissue_type="Embryo, stage 31/32, Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..2091 FT /gene="MGC53523" FT CDS 36..1616 FT /codon_start=1 FT /product="MGC53523 protein" FT /db_xref="GOA:Q7ZX76" FT /db_xref="InterPro:IPR011143" FT /db_xref="UniProtKB/TrEMBL:Q7ZX76" FT /protein_id="AAH45131.1" FT /translation="MRLPRKLCVTLGVTVPLSLFCIHIFTKPASVVNVWNREAPKDLLD FT PSVFQPSEKLAHIPFKWKEDVLQLLPRNSCKCEAEATLNIPFRQELFGKPYAVEFASAF FT DQSELDETKKRREQEFKKYNMRYHNPTDSLIIAKANSPLQYPTQGVEVHPLKTIIIPGL FT NIQDYLKKIYTVSLSATMGTFNTAAEVDEVTVKGAGEGHITLSSPNMDNLNRQLQFISY FT TNTIFNPNTADIVKFQTDEHSATFYIKIHHPRIPKLYDSGSSNSKYNISTLVTIATKTF FT LRYDKLQNLIDSIRKYYPTVLIIIADDSEKPQKVEGPFIEQYLMPFGKGWFAGRNLAIS FT QVTTKYVLWVDDDFLFSPRTKIEKLVEILEKTILDLVGGAVREITGYYTTYRQKISIFP FT GGKEGDCLMTHQGYHHAIEGFPNCVVTDGVINFFLARTEKALQVGFDPRLSRIGHLEFF FT IDGLGILHVGSCDDVVVDHASKIHLPWSKSETDKEYAKFRYPKSSDNSANVNLNLYYFK FT NRFKCMTGN" FT misc_feature 858..1229 FT /note="Glycos_transf_2; Region: Glycosyl transferase. FT Diverse family, transferring sugar from UDP-glucose, FT UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, FT to a range of substrates including cellulose, dolichol FT phosphate and teichoic acids" XX SQ Sequence 2091 BP; 677 A; 429 C; 423 G; 562 T; 0 other; agaggcgtag ggtgtcccat tctttcagat ccatcatgcg ccttcctaga aaactgtgtg 60 taaccctggg ggtgactgtg cccctgtccc ttttctgcat tcacatcttt accaagcctg 120 ccagtgtggt gaatgtctgg aacagggaag cacccaagga tctgctggac cccagtgttt 180 ttcagccgtc tgagaaactg gctcatatac ctttcaagtg gaaagaagat gtactgcagt 240 tgcttccaag gaacagttgc aaatgtgagg ccgaagccac cctgaacatt cctttcagac 300 aggaactctt tggaaagccc tacgcagtag aatttgcttc agctttcgat caatccgagc 360 ttgatgaaac caaaaaaagg agagagcaag aattcaagaa atataatatg aggtatcaca 420 atccaacaga cagtcttatt attgcaaagg ccaactctcc tctgcagtat cccacacagg 480 gggttgaagt ccatcctctg aagacaataa ttataccagg tctcaatatc caagattacc 540 ttaaaaagat ttacacggtg agcttgtcag ccactatggg aacttttaac accgctgctg 600 aagttgatga agttacagtt aaaggagctg gagaagggca cataacatta tccagcccta 660 acatggacaa cctgaatcgc caacttcagt ttatttcata taccaacacc attttcaatc 720 caaatacagc tgacattgtg aaatttcaga cagatgaaca ttcagccact ttttacatca 780 aaattcacca tcctagaatt cccaagttgt atgactcggg atcaagtaat tccaaataca 840 atatcagcac cttggtcacc atagctacaa agactttcct tcgctacgac aagctacaga 900 atttaataga cagcattaga aagtattacc cgacggtcct tatcatcatt gcagacgaca 960 gcgagaaacc gcagaaagtc gagggaccct ttatcgagca atatcttatg ccatttggaa 1020 agggctggtt tgccggcagg aatttagcca tctcacaagt caccacaaaa tatgtcttgt 1080 gggttgatga tgatttttta ttcagccccc gtacaaaaat tgagaagctt gttgaaattt 1140 tggagaaaac aattctggat ttggtgggtg gtgctgtaag agaaatcaca ggatattata 1200 ccacataccg ccagaagatt agtatttttc ccggaggcaa ggaaggtgac tgcctgatga 1260 cacatcaagg ctaccatcat gccattgaag gcttccctaa ctgtgtggtc accgatggag 1320 taataaactt tttcctagcg agaacagaaa aggctctaca agttggtttt gacccacgtt 1380 tgtctagaat tggacattta gaattcttca ttgacgggct ggggatactg catgttggtt 1440 cctgtgatga tgtcgtcgta gatcatgcct caaaaatcca tttaccctgg tccaagtcag 1500 aaacagataa agaatatgca aagttccggt accccaaatc ctcggataat agtgcaaatg 1560 tgaatcttaa tttgtattat tttaaaaacc gattcaaatg catgactgga aactgatgga 1620 tgatgtcaag ccaaagtaaa gaatgcgagg tccaaaaatg aaagccatga aaaggacccc 1680 tcgctttcca gtgcacatca gtgcttaata tggcaggcaa gtcctgtaat atgttctgct 1740 gcttggttgg gacatgttgc aaaagcatct ctgtgacaac aatattatca atattatcta 1800 aatttagatc tctctaaatc tttgccataa agaattctgc aaagctgtat tagcaggact 1860 agtacttgca gaaataatgg gaccagttct atggtgtgtg tttttaaaag catcttgttc 1920 tcttctaccc taattaaatg ttgtttattt aagtgtacca aagatgggcg gtgaattgat 1980 tgtaaaactt gtaatgacaa tgcaactgtt tggtgatgca actcctaaat aaaccttgag 2040 ggaagaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a 2091 // |
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