EBI Dbfetch

ID   BC044995; SV 1; linear; mRNA; STD; VRT; 1717 BP.
XX
AC   BC044995;
XX
DT   30-JAN-2003 (Rel. 74, Created)
DT   15-SEP-2006 (Rel. 89, Last updated, Version 7)
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DE   Xenopus laevis 7-dehydrocholesterol reductase, mRNA (cDNA clone MGC:53052
DE   IMAGE:5541800), complete cds.
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KW   MGC.
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OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1717
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1717
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [3]
RC   NIH-MGC Project
RP   1-1717
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (23-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
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DR   ImaGenes; IMAGp998B0912240Q.
DR   ImaGenes; IRAKp961P0195Q.
DR   ImaGenes; IRBHp990C046D.
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CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Igor Dawid
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 95 Row: p Column: 1
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 27924198.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1717
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Emb4"
FT                   /clone="MGC:53052 IMAGE:5541800"
FT                   /tissue_type="Embryo, stage 31/32, Xenopus"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:8355"
FT   gene            1..1717
FT                   /gene="xdhcr7"
FT   CDS             56..1477
FT                   /codon_start=1
FT                   /gene="xdhcr7"
FT                   /product="xdhcr7 protein"
FT                   /db_xref="GOA:Q7ZXH1"
FT                   /db_xref="InterPro:IPR018083"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7ZXH1"
FT                   /protein_id="AAH44995.1"
FT                   /translation="MGERRRANASRGDKKVANGEKQHVGQWGRAWEVDYFSLASVIFLL
FT                   AFAPLIVYYFVMSCDQYQCALTAPVLDLYSGKARLSDIWDKTPALTWTAVKIYLAWVSF
FT                   QVFLYMFLPDILHKFVPGYEGGVQEGARTPAGLINKYQVNGLQAWTITHLLWFANAYHF
FT                   HWFSPTIVIDNWIPLLWCANLLGYSVATFALVKANFFPTNANDCKFTGNFFYDYMMGIE
FT                   FNPRIGKWFDFKLFFNGRPGIVAWTLINLSYAAKQQELYGQVTNSMILVNVLQAIYVVD
FT                   FFWNESWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYNPVELSTTAAVAVLL
FT                   LGLIGYYIFRMTNHQKDLFRRTNGNCKIWGKKPKSIECFYVSADGKRHYSKLMISGFWG
FT                   VARHLNYTGDLMGSLAYCLACGFDHLLPYFYFIYMTILLVHRCIRDEHRCSSKYGKDWK
FT                   LYTSAVPYRLLPGLF"
XX
SQ   Sequence 1717 BP; 430 A; 429 C; 402 G; 456 T; 0 other;
     aaggaactgc atggggacag ctgctggggc cacataagcg ccacacaaag agaaaatggg        60
     agagcggaga agagcgaatg catccagggg ggacaagaaa gtggccaatg gagaaaagca       120
     acatgtgggc cagtggggca gagcttggga agtcgattac ttctcattgg cctcagtcat       180
     attcctgttg gcgtttgctc cgctgatagt ctactacttt gtcatgtcgt gtgatcagta       240
     ccagtgcgcc ctcaccgccc cagtcctgga cctatactct ggcaaagcgc ggctgtccga       300
     catctgggac aagactcccg cactcacctg gactgccgtc aagatctacc tagcgtgggt       360
     ctctttccag gtgttcctgt atatgttcct tcctgatatc ttacataaat ttgtgcctgg       420
     ttacgaggga ggagtgcaag aaggagcaag gactcctgct ggcttgataa acaagtacca       480
     agtcaacgga ctgcaggcct ggactattac ccacctcctg tggtttgcca atgcttacca       540
     tttccactgg ttctccccaa ccattgtcat tgacaactgg atcccgctgc tgtggtgcgc       600
     caatctcctg ggctattctg ttgccacctt cgctttggtg aaagccaact tcttccccac       660
     taatgccaac gactgcaaat tcacaggcaa tttcttctac gactacatga tgggcattga       720
     gttcaacccc cgcattggaa agtggtttga cttcaaactg ttctttaatg ggcgacccgg       780
     gatcgtcgcc tggaccttaa ttaacttgtc gtatgctgcc aaacagcaag agctctacgg       840
     gcaggtcacc aactccatga ttctggtcaa tgttcttcag gcaatctatg tagtggactt       900
     tttctggaac gaatcctggt acctgaagac tattgacatt tgccatgacc actttggctg       960
     gtatctggga tggggagatt gtgtctggtt gccctacctc tataccctac agggtttata      1020
     tctggtgtac aacccagttg agctctctac cactgctgcc gttgcagtcc tcctgctcgg      1080
     tttgattggc tattacatct tcagaatgac caatcaccag aaagacctct tccgacgcac      1140
     taacggcaac tgcaagatct gggggaagaa gcctaaatcc atcgaatgtt tttacgtgtc      1200
     agcggacggc aagcgacact acagcaagtt gatgatttca gggttttggg gggtggcgag      1260
     gcatttaaac tacacaggag atttaatggg gtccctggcg tactgcctgg cctgtggctt      1320
     tgaccacctc ctgccttact tctacttcat ctacatgacc atcttgctgg tgcaccgctg      1380
     cataagggac gaacaccgct gctcgagtaa atacgggaag gactggaagc tttacaccag      1440
     cgccgtgccc tataggttac tccccggact cttctaagag aggcccaata acatttcaag      1500
     aaagattaag tcacagattt tagtgtggac tttaactaaa gactgaaaaa cattaaaaac      1560
     acatggattt tagatttttg aacttttttg gccttaaaac ttgaaaatgg ttcacggatt      1620
     ttactgtata actgttttac cgcctcacct ttctttccta gagcaccggc ccctccaaat      1680
     aaagaggatt ctgttatttt tcaaaaaaaa aaaaaaa                               1717
//