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EBI DbfetchID BC044992; SV 1; linear; mRNA; STD; VRT; 2639 BP. XX AC BC044992; XX DT 30-JAN-2003 (Rel. 74, Created) DT 27-MAY-2005 (Rel. 83, Last updated, Version 5) XX DE Xenopus laevis hypothetical protein MGC53035, mRNA (cDNA clone MGC:53035 DE IMAGE:5537330), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-2639 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2639 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2639 RA Klein S., Strausberg R.; RT ; RL Submitted (23-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998H0312228Q. DR ImaGenes; IRAKp961N1195Q. DR ImaGenes; IRBHp990D066D. DR ImaGenes; RZPDp988C0290D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, CC Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, CC Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo CC Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven CC Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline CC Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, CC Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, CC George Yang, Scott Zuyderduyn, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 95 Row: n Column: 11 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2639 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb4" FT /clone="MGC:53035 IMAGE:5537330" FT /tissue_type="Embryo, stage 31/32, Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..2639 FT /gene="MGC53035" FT CDS 104..2182 FT /codon_start=1 FT /product="MGC53035 protein" FT /db_xref="GOA:Q7ZXH3" FT /db_xref="InterPro:IPR001876" FT /db_xref="UniProtKB/Swiss-Prot:Q7ZXH3" FT /protein_id="AAH44992.1" FT /translation="MAQSSPQLDIQVLNDLQQRFPEIPRDVVSQCMLQNNSNLDACYRA FT LTQESCKYLYMDYHNLDETRMNSNLLHINLGIHPSSTYHTGDGAQVNGRPLVHSSSDGH FT IDPQRSPGKLLCLVPEPQSAPAVVAQNYNQFFLNDQNRNSPTPPPQPVQQPGVGTSAMQ FT ASLPTYMHVPRYSANPITVTVSPSGHNVPRALQIVPQVQNNPYGTPIYIRHPSQNSPGR FT QTQQNTAWPPSPQAVLPHYNPCPPYPQSFQPTQYSPKQPQIPQSAFRSPPTSQCTSPYS FT SPQHQVQTNQLSHQTSHVFLPPSPSTVSPHLYQQAPPPYPKQSSLGYLPYGPGLNKGPM FT NKIEITVESQQRPGPTLNRSPSPINNQSAQRSQQHPVYVSNARSGSPSRGIPTQPKASY FT SGSPLFITYSQPPTTTGSPTPSSRVVMSPSNPTVFKITVGRAPTENLLNIVDQEQHPST FT PEPIQPISLLPVSGGDKGIHKYHRSSSSGSDDYAYTQALLLHQRARMERLAKELKHEKE FT ELERLKAEVNGMEHDLMQRRLRRVSCTTAIPTPEEMTRLRGLNRQLQINVDCTQKEIDL FT LQSRGMAKLDVKAMSNFYDNLSPGPAVPPNTCKKESSETTSGERKARRISVTSKIKSDP FT PDLQAPSSLDIGPWQRASPRPGRDEDFEGSPWNCNSCTFLNHPALNRCEQCEMPRFT" FT misc_feature 134..253 FT /note="CUE; Region: CUE domain. CUE domains have been shown FT to bind ubiquitin. It has been suggested that CUE domains FT are related to pfam00627. CUE domains also occur in two FT protein of the IL-1 signal transduction pathway, tollip and FT TAB2" FT misc_feature 2096..2170 FT /note="ZnF_RBZ; Region: Zinc finger domain" XX SQ Sequence 2639 BP; 812 A; 649 C; 524 G; 654 T; 0 other; ctggatacaa aatgcaggaa gggtcagaag atcataacca ccggaggact ttttgagtcc 60 tgtcgtgtct tttctgagta ttagtctgcc atcgggccct gtgatggcgc agagcagtcc 120 gcagctcgac atacaggtat taaatgatct tcagcaacgc ttccctgaga ttccacggga 180 tgtggtttct cagtgcatgc tgcagaacaa cagcaatctt gatgcttgtt atagagctct 240 tacacaagag agttgcaaat acctgtatat ggattatcac aatttggatg aaacacgaat 300 gaacagtaat cttttgcaca tcaaccttgg cattcatcca agtagcacat atcatacagg 360 agatggggca caggttaatg ggcgtccact ggttcacagt tccagtgatg gtcacattga 420 tccacagcgc tctccaggca agcttttgtg tcttgttcca gaaccccaat ctgctccagc 480 agttgtggca caaaattaca accaattctt cttgaatgac cagaatcgaa attcaccaac 540 accccctcca cagcccgttc agcagccagg tgtcggcacg tctgctatgc aagcttctct 600 gcctacatat atgcatgtac ctcgttatag tgcaaatcct ataactgtaa cagtatcgcc 660 ttcaggccac aatgttccca gagctttaca gatagttcct caagttcaga acaatcctta 720 tggaacacct atttacataa gacatccatc acagaattct ccaggcaggc aaacccaaca 780 gaacaccgca tggcctcctt caccacaggc tgttcttccc cattataatc catgtcctcc 840 ttatcctcaa agttttcaac ctacacagta ttctccaaaa cagcctcaga ttccacagtc 900 tgcgtttcga tccccgccaa cttcacaatg cacttctccc tatagttctc ctcaacatca 960 agtgcagacc aaccaactga gccaccaaac ttcgcatgtg tttttgccac ccagcccatc 1020 aacagtgtca cctcatctat accagcaggc acctcctccc tatcctaagc aaagttctct 1080 tgggtatctt ccctatggac ctggtctgaa caagggacct atgaacaaga tagaaatcac 1140 agttgaatca caacaaagac ctggacccac cttgaataga agtccgtcac caataaataa 1200 ccagtctgcc caaagaagcc aacaacatcc tgtttatgta tcaaatgcac gttcagggtc 1260 accttcaagg ggaataccta cccaaccaaa ggcttcatat agtggcagcc cattatttat 1320 tacatattca caaccaccta caaccactgg gtctcctacc ccttcttcac gtgttgtgat 1380 gtctccgtct aatccgaccg tgtttaaaat caccgttgga cgtgccccaa ctgaaaatct 1440 attaaatata gtggaccaag agcagcatcc cagcacacca gagcctatac agcccatttc 1500 cttattgcca gtttcgggtg gagacaaagg aatccataaa tatcacagaa gttccagctc 1560 tgggtcagat gattatgcat atacccaagc cttattactg catcagaggg caagaatgga 1620 gcggttggct aaagagctga aacatgaaaa agaggagctg gaaagactga aagcagaagt 1680 gaatggcatg gagcatgatc taatgcagcg ccgcctccgg agagtgagct gtacaacagc 1740 aattccaact ccagaagaaa tgaccagact gagaggtcta aacaggcaac ttcaaataaa 1800 tgttgactgt acacagaaag aaattgatct gcttcagtcc cgaggaatgg caaagcttga 1860 tgtaaaagca atgagtaact tttatgacaa cttgtcacct ggtcctgctg ttccacctaa 1920 tacctgtaaa aaggagtcgt ccgaaaccac ttcaggagag agaaaagcca gacgaataag 1980 tgtaacctcc aaaattaaat ctgatcctcc tgatttacag gctcccagta gtttggatat 2040 tggtccctgg cagagggcca gcccaagacc aggaagagat gaagattttg aagggtctcc 2100 ctggaactgc aatagctgta ctttcctcaa tcacccagca ctaaaccgct gtgaacagtg 2160 cgagatgcca cgattcacat gacttcactg taaaagcctt cattttgctt gaagttttta 2220 tacagattct atctagcatg caagtaaggt accttactta agtcagatgg atcaacaagc 2280 tgaggccaga tccagagaag gactaggaat attggttata aaaccaataa tgggagaact 2340 gtgctgatga tgtggcagaa tgctctctac aatcttgtcc atgaatgatg gaggtctcaa 2400 gatgctggtc atttgttcct ccagaagaca gaagatacgc caagattgta tagaggcaaa 2460 tgaagtgatg ttgctgacca attatctgga catattggaa aaacacagga gaaatggact 2520 aaaatgctct attctgcttc ttgtaagcat cctactgaat gaagacttta gttgtggaac 2580 tggtgttgta gtataacaca aatttatgaa gcctacttaa aaaaaaaaaa aaaaaaaaa 2639 // |
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