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EBI DbfetchID BC044549; SV 1; linear; mRNA; STD; VRT; 1727 BP. XX AC BC044549; XX DT 11-FEB-2003 (Rel. 74, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Danio rerio zgc:55941, mRNA (cDNA clone MGC:55941 IMAGE:3819282), complete DE cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1727 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1727 RG NIH MGC Project RA ; RT ; RL Submitted (17-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000014320; Danio_rerio. DR Ensembl-Gn; ENSDARG00000031586; Danio_rerio. DR Ensembl-Gn; ENSDARG00000040990; Danio_rerio. DR Ensembl-Gn; ENSDARG00000057719; Danio_rerio. DR Ensembl-Gn; ENSDARG00000062974; Danio_rerio. DR Ensembl-Gn; ENSDARG00000070078; Danio_rerio. DR Ensembl-Tr; ENSDART00000058171; Danio_rerio. DR Ensembl-Tr; ENSDART00000067817; Danio_rerio. DR Ensembl-Tr; ENSDART00000080460; Danio_rerio. DR Ensembl-Tr; ENSDART00000082300; Danio_rerio. DR Ensembl-Tr; ENSDART00000091597; Danio_rerio. DR Ensembl-Tr; ENSDART00000102557; Danio_rerio. DR ImaGenes; IMAGp998F199111Q. DR ImaGenes; IRAKp961P21102Q. DR ImaGenes; IRBOp991A0117D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 102 Row: p Column: 21 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 41389080. XX FH Key Location/Qualifiers FH FT source 1..1727 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="MGC:55941 IMAGE:3819282" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..1727 FT /gene="zgc:55941" FT /note="synonyms: zgc:77889, wu:fb61c11, fb61c11" FT CDS 45..1457 FT /codon_start=1 FT /gene="zgc:55941" FT /product="zgc:55941" FT /db_xref="GOA:Q803B7" FT /db_xref="HSSP:1LG2" FT /db_xref="InterPro:IPR001223" FT /db_xref="InterPro:IPR001579" FT /db_xref="InterPro:IPR002557" FT /db_xref="InterPro:IPR011583" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:Q803B7" FT /db_xref="ZFIN:ZDB-GENE-040426-2014" FT /protein_id="AAH44549.1" FT /translation="MGRLTLVAGLGLVLCHLAFSMEMGCYFTNWSQYRPGIGKYTPANV FT DPFLCTHLFYAFAMINHANELITYEWNDETLYKAFNELKNANPHLRTLLAVGGWNFGST FT QFSIMVSSAANRQTFIQSSIKFLRTYGFDGMDLDWEYPGSRGSPPEDKQRFTLLCKELL FT EAYEAEGKATGRRRLMLSAAVSAGKGTIDDGYEIAEIAKYLDFINIMTYDFHGTWERFT FT GHNSPLYQGSKDEGDLVYFNTDYAMRYWRDNGTPVEKLRMGFATYGRTFRLTSSDTSVG FT APASGPASAGTYTREAGFWSYYEICGFLEGTTVQWIDDQKVPYATKNSEWVGFDTKESY FT ETKVRYLKDKKFGGAFVWALDLDDFAGQFCGQGNHPLMGHLRNLLDIELPPLPPPTTAK FT PGQSTTRPTTTTTTTTHAPGPGFCNGKPDGLYAHPDPNKYYSCAGGQTYVDNCGAGTEF FT DESCKCCGWPKH" XX SQ Sequence 1727 BP; 477 A; 412 C; 397 G; 441 T; 0 other; acattttgct tgcttgaggt accccagaga aactggaaat aattatgggg agactcacac 60 ttgtagcagg tttgggcttg gtgctctgcc accttgcctt ttccatggaa atgggctgct 120 acttcaccaa ctggtcccag tacaggcctg ggattggaaa gtacactcct gcaaatgtcg 180 accctttcct ttgcacacat cttttctatg ctttcgccat gatcaaccat gccaatgagc 240 ttatcacata tgagtggaac gatgagactc tgtacaaggc cttcaatgag ctcaaaaacg 300 cgaatcccca tcttagaact cttttggctg ttggaggatg gaactttggt tccacacagt 360 tctccatcat ggtgtccagt gctgcaaacc gacaaacatt cattcagtct tccatcaaat 420 tcttgagaac ttatggattc gatggtatgg acttggactg ggaatatcct ggatcaagag 480 gaagtccacc tgaagacaaa caaagattca ctctgctgtg caaggaactc cttgaggcct 540 atgaggctga gggcaaagcc actggcagac gcagactgat gctgagtgct gctgtatctg 600 ctggcaaagg cactattgat gatggatacg agattgcaga gattgccaaa tacctggatt 660 tcatcaacat catgacttac gacttccatg gaacttggga gcgattcaca ggacacaaca 720 gccctctgta ccaaggctca aaggatgagg gagaccttgt ctacttcaac accgactatg 780 ctatgcgcta ctggagggat aatggcaccc cggtggagaa actcagaatg ggctttgcta 840 catacggtcg cactttccgt ctgacatctt cagataccag cgttggagct ccagctagtg 900 gacctgcttc agctggaacc tacactcgcg aggctggatt ctggtcttac tatgagatct 960 gtggcttcct ggagggaaca acagtccagt ggattgatga ccagaaggtg ccctatgcca 1020 caaagaacag cgagtgggtt ggatttgaca ccaaggagag ttatgaaact aaggtccgtt 1080 atctgaaaga caagaaattt ggtggagctt tcgtgtgggc acttgatctg gatgactttg 1140 ctggacagtt ttgtggtcag gggaaccatc ctctcatggg acacctgcgc aatcttctgg 1200 atattgaatt gcctcctctg cctcccccca caactgccaa acctggccaa agcaccacaa 1260 gacccaccac taccaccacc accactactc atgctccagg gccaggattc tgtaacggga 1320 agcccgatgg actttatgct caccctgacc ccaacaaata ttacagctgc gctggaggcc 1380 agacatatgt ggataattgc ggagcaggca ctgagtttga tgagagctgt aagtgctgtg 1440 gctggcctaa acactaagtg atcactgaag gcatctacat acagtgaaat gggacactgc 1500 acatttgaat aagcacacac aaatgaatct aaacatctgc aactacagct gtttcataca 1560 aagggaattg ctgtagactg aacataattc tttgtgcttt atctatccac ttgaatgtat 1620 tttaaaagca tgcattgctt attttttgtt gctatttttt taaaaatctg tcaacgtgac 1680 tggcgctcaa caatgacttc ccttcaaagc aaaaaaaaaa aaaaaaa 1727 // |
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