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EBI DbfetchID BC044543; SV 1; linear; mRNA; STD; VRT; 2069 BP. XX AC BC044543; XX DT 24-JAN-2003 (Rel. 74, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 12) XX DE Danio rerio histone deacetylase 3, mRNA (cDNA clone MGC:55927 DE IMAGE:3819179), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2069 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2069 RG NIH MGC Project RA ; RT ; RL Submitted (17-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000000241; Danio_rerio. DR Ensembl-Gn; ENSDARG00000005335; Danio_rerio. DR Ensembl-Gn; ENSDARG00000019478; Danio_rerio. DR Ensembl-Gn; ENSDARG00000036140; Danio_rerio. DR Ensembl-Gn; ENSDARG00000037514; Danio_rerio. DR Ensembl-Gn; ENSDARG00000042522; Danio_rerio. DR Ensembl-Gn; ENSDARG00000052396; Danio_rerio. DR Ensembl-Gn; ENSDARG00000068740; Danio_rerio. DR Ensembl-Gn; ENSDARG00000073797; Danio_rerio. DR Ensembl-Tr; ENSDART00000000250; Danio_rerio. DR Ensembl-Tr; ENSDART00000023484; Danio_rerio. DR Ensembl-Tr; ENSDART00000024342; Danio_rerio. DR Ensembl-Tr; ENSDART00000038391; Danio_rerio. DR Ensembl-Tr; ENSDART00000049588; Danio_rerio. DR Ensembl-Tr; ENSDART00000054626; Danio_rerio. DR Ensembl-Tr; ENSDART00000062350; Danio_rerio. DR Ensembl-Tr; ENSDART00000074230; Danio_rerio. DR Ensembl-Tr; ENSDART00000099540; Danio_rerio. DR Ensembl-Tr; ENSDART00000114265; Danio_rerio. DR ImaGenes; IMAGp998B129111Q. DR ImaGenes; IRAKp961O19102Q. DR ImaGenes; IRBOp991A0517D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 102 Row: o Column: 19 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 27882114. XX FH Key Location/Qualifiers FH FT source 1..2069 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="MGC:55927 IMAGE:3819179" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2069 FT /gene="hdac3" FT /note="synonyms: MGC55927, zgc:55927" FT CDS 135..1421 FT /codon_start=1 FT /gene="hdac3" FT /product="histone deacetylase 3" FT /db_xref="GOA:Q803C3" FT /db_xref="HSSP:1T67" FT /db_xref="InterPro:IPR000286" FT /db_xref="InterPro:IPR003084" FT /db_xref="UniProtKB/Swiss-Prot:Q803C3" FT /db_xref="ZFIN:ZDB-GENE-040426-847" FT /protein_id="AAH44543.1" FT /translation="MTNRTAYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKM FT MVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFC FT SRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPR FT VLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVP FT LRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVE FT FVKGFKIPLLVLGGGGYTVRNVARCWTFETSLLVEESISDELPYSEYFEYFAPDFTLHP FT DVSTRIENQNSRQYLEQIRQTVFENLKMLNHAPSVQIRDVPSDLLSYERPDEADPEERG FT SEENFSRPEAANEFYDGDHDHDKESDVEI" XX SQ Sequence 2069 BP; 614 A; 356 C; 447 G; 652 T; 0 other; gaagaagaag cggaagtgat ttttttgctg ttttagagaa gatggcggcg gcgttgaaca 60 gaaattagaa taattaaaac atttttgttt tctcgtgcta gaaataactg cttttattta 120 cactctgttg caacatgacc aatcgaactg cgtacttcta tgacccagac gttgggaact 180 ttcactatgg tgctgggcat ccaatgaaac ctcatagact atcactcaca catagtcttg 240 tacttcatta tggactatac aagaagatga tggttttcaa accctacaag gcatcccagc 300 atgacatgtg caggttccac tctgaggatt acatagactt tctgcagaag gtcagtccaa 360 acaacatgca gggcttcaca aagagtctca acactttcaa tgtaggaggt gactgtcctg 420 tctttccagg tctgtttgag ttttgttcaa gatacacagg tgcctcatta caaggagcaa 480 ctcagttaaa ccacaagatt tgtgacattg ctataaactg ggcgggaggt ttacatcatg 540 caaaaaagtt tgaggcatct ggattttgtt atgtgaacga cattgtcatc agtattcttg 600 aactcctgaa gtatcatcca cgtgtgctct acattgacat tgatattcat catggggatg 660 gtgtacagga agcattttat ctcacagaca gggtcatgac agtgtccttc cacaaatatg 720 ggaactattt tttcccggga actggtgata tgtatgaagt gggggctgag agcggccgct 780 attactgctt gaatgtccct ctgcgagatg gcattgatga ccagagttac agacaactat 840 ttcagccagt tatcaagcag gtggtagact tttatcagcc aacctgtatt gttcttcagt 900 gtggagcaga ttctttggga tgtgatcgat taggatgctt taatctcagc atacgaggac 960 atggagaatg tgtggagttt gtgaagggct tcaaaattcc gctgcttgtt ctgggtggag 1020 gagggtacac cgtgaggaat gtggctagat gttggacatt tgaaacatca ttgcttgttg 1080 aggagtcaat tagtgatgaa cttccatata gtgaatactt tgaatatttt gctccagact 1140 tcacacttca tccagatgtc agcacaagga tagaaaacca aaattctaga caatatttgg 1200 aacaaattcg tcaaactgtg tttgaaaatt tgaagatgtt gaatcatgca ccaagtgtcc 1260 agatccgcga cgttccctct gatttgctga gctacgagcg accagacgag gctgatcctg 1320 aagagagagg atcagaagag aacttttcta ggcctgaagc tgcgaatgaa ttttatgatg 1380 gtgaccatga tcatgataaa gaaagtgatg tggagatctg aagacttttt tgtgaagtgt 1440 acctgtcttt ggtcttcagc catgaaggtg tccattcctt gcagtatcta cagtacttga 1500 ctgtgatgtg tgggtaaaag ccaatcattt ttttaacatg tcgaaattgt gtagttcacc 1560 atatgtaggt ctttatattg tatttttctg tttatcaaat tttaagtaaa aaagggaact 1620 ttacaatgag tcctgcaagc agcttctgct gcatttgtat tcagagggtt caacaataat 1680 gtgatgaatg atggctttgt gtgcctaata tccaagtgtt ttgatttaga gaaaataaaa 1740 tctatttgaa atgagccctt ctatctaaaa catctattta cacagtctga ccctaagaac 1800 tatctaaaat gtggcggatc accagtgctg tttgttattt taattatttg gcagctgtct 1860 tgttttgtta tattttgtta tagtatgtct catagtttga gttttgtatg ttaagaatat 1920 gacatggtgg aggaaacaac taggagataa atgtataata ttttcacaaa aatgttattc 1980 aaaatttcat gtcacaagtc acaacatata acacattttt ttgtatcctc aactgtaata 2040 aaaacatttt acaaaaaaaa aaaaaaaaa 2069 // |
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