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EBI DbfetchID BC044475; SV 1; linear; mRNA; STD; VRT; 2173 BP. XX AC BC044475; XX DT 24-JAN-2003 (Rel. 74, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Danio rerio hypoxia-inducible factor 1, alpha subunit inhibitor, mRNA (cDNA DE clone MGC:55763 IMAGE:3816694), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2173 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2173 RG NIH MGC Project RA ; RT ; RL Submitted (17-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000006332; Danio_rerio. DR Ensembl-Gn; ENSDARG00000020328; Danio_rerio. DR Ensembl-Gn; ENSDARG00000031915; Danio_rerio. DR Ensembl-Gn; ENSDARG00000062868; Danio_rerio. DR Ensembl-Gn; ENSDARG00000073728; Danio_rerio. DR Ensembl-Gn; ENSDARG00000075532; Danio_rerio. DR Ensembl-Gn; ENSDARG00000078841; Danio_rerio. DR Ensembl-Tr; ENSDART00000020506; Danio_rerio. DR Ensembl-Tr; ENSDART00000032844; Danio_rerio. DR Ensembl-Tr; ENSDART00000042049; Danio_rerio. DR Ensembl-Tr; ENSDART00000091349; Danio_rerio. DR Ensembl-Tr; ENSDART00000098592; Danio_rerio. DR Ensembl-Tr; ENSDART00000104725; Danio_rerio. DR Ensembl-Tr; ENSDART00000109485; Danio_rerio. DR Ensembl-Tr; ENSDART00000113089; Danio_rerio. DR ImaGenes; IMAGp998J239104Q. DR ImaGenes; IRAKp961G06102Q. DR ImaGenes; IRBOp991A0415D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 102 Row: g Column: 6 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 27882524. XX FH Key Location/Qualifiers FH FT source 1..2173 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="AB" FT /mol_type="mRNA" FT /clone_lib="Sugano Kawakami zebrafish DRA" FT /clone="MGC:55763 IMAGE:3816694" FT /tissue_type="Whole body, adult, (one male and one female, FT including unfertilized eggs)" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2173 FT /gene="hif1an" FT /note="synonyms: cb728, 5139, id:ibd5139" FT CDS 201..1235 FT /codon_start=1 FT /gene="hif1an" FT /product="hypoxia-inducible factor 1, alpha subunit FT inhibitor" FT /db_xref="GOA:P59723" FT /db_xref="InterPro:IPR003347" FT /db_xref="UniProtKB/Swiss-Prot:P59723" FT /db_xref="ZFIN:ZDB-GENE-030826-19" FT /protein_id="AAH44475.1" FT /translation="MAETDGAAAFTELRDPGWDGSQLRQYTFPTRQIPRLSHTDPRAEV FT LINNEEPVVLTDTSLVYPALKWDIPYLQENIGNGDFSVYIAENHKFLYYDEKKMVNFQD FT FVPKSRRIEMKFSEFVDKMHQTEEQGGKGRVYLQQTLNDTVGRKIVVDFLGFNWNWINK FT QQAKRNWGPLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGHKRCILFPPEQFDCLYPYP FT VHHPCDRQSQVDFENPDYDKFPNFKNAVGYEAVVGPGDVLYIPMYWWHHIESLLNGGET FT ITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEKMLGEALGDPHEVGPLLNMMIKGRYD FT HGLS" XX SQ Sequence 2173 BP; 600 A; 433 C; 517 G; 623 T; 0 other; gttatgagta ggaaaacaca gccagtgttt ctgttttcac gctgcttgta tgactgcgcg 60 ggtcgctcgt ctgttcgtgc ctcggcgggg tgtgtgaagc ccaggagcgg ttctcgagct 120 cgccggctcc cctttcagac catcggcctc tcgaggtttc tttgtgctgc cccagtgatc 180 ctctggcgga ctcggaggac atggcggaga ccgacggagc cgccgccttc acggagctgc 240 gcgacccggg ctgggatggg tcgcagcttc gacagtatac ttttccaacc cgacaaatac 300 cgcgactgtc ccatacggat ccgcgtgccg aggtgctcat caataacgag gagcctgttg 360 tactgacaga caccagttta gtatatccag ctctaaaatg ggacataccc tacttgcagg 420 agaatatcgg aaatggggac ttctctgttt acatagcaga aaatcacaaa ttcttatatt 480 acgacgagaa gaaaatggtt aactttcaag actttgtgcc taaatctcgt cgaatagaga 540 tgaagttttc tgagtttgtg gacaagatgc atcaaacaga agagcaaggc gggaaaggaa 600 gagtgtactt gcaacagact ctgaatgata cggtagggcg gaaaattgtg gtggatttcc 660 ttggattcaa ttggaactgg attaacaaac agcaagctaa acgaaactgg ggaccgctga 720 cctctaatct gctgctcata ggcatggaag gcaatgtaac accagcacac tatgacgagc 780 aacagaattt ctttgcacaa atcaaaggac ataaaagatg catcctcttt ccgccggaac 840 agtttgactg cctctatcct tatccagtcc atcatccatg tgacagacag agtcaggttg 900 attttgaaaa tcctgactat gacaagtttc ctaatttcaa aaatgctgtt gggtatgagg 960 ctgtcgtggg acccggagat gtgctgtaca tccccatgta ttggtggcat cacatcgagt 1020 cccttttaaa tggaggagag accatcacag tcaacttctg gtacaagggg gctcccactc 1080 caaagaggat agagtatcct ctgaaagccc atcagaaggt ggccataatg aggaatatag 1140 agaagatgtt gggagaggcc ttgggggacc cacatgaggt cggtccgttg ctgaacatga 1200 tgatcaaggg cagatatgat catggactga gttaatagcc tgtactgaag cttctttagt 1260 gtgctgctac aacagtctgt ttatgtgtgt atgagagaga gaatgtgaat gggagtatgt 1320 gcttgtgtgt acattcagac tgttgaaatg ccagtgcatg gcagtatttt ggcagtataa 1380 agactttcgc ctttgtctgc attcacttac tggacccatt gtcgttagtt ctgtgttggt 1440 gtaagaaaaa ataccactgt tgaggaatcc tgatttgatc tctccttaac aagcgtcctt 1500 aaattcagca ttatgtgcta aaaaagtaat aaaaaataga cgaatgcatt agcagaggcc 1560 tctaaagcac ttttacacca cccagagcgc ctgttgtcag gttttgtccc atgttgggaa 1620 aaagaaggtg ccatatgtct tgattaaaac tcctgtggat ttgagtccgt acagtgaaat 1680 ctggctgagc gcctcaagca catccacaac ggaggatgat ttacaacttg aaacctacca 1740 ttgacggttt gaaccggttc gtactgtcat tgttaatggt gttttttgtg tttgcttttg 1800 actctcatga tgatgatgat gatgtttctg ttataggata gaagtaacgc agaatacaat 1860 ggttaaatca caatgtgttt ttaaactgaa gggatttctt tccttttgca gccgactcac 1920 tgaattaaag tttgcatttg tttatgcatt tttaatgata ttttcccttc tttttgtttt 1980 tttagccatg tgtacattga agcaaatgtt ttagtttctt gatattttat ttttcagtgt 2040 aacgttatat ggtaccattt cagtaaggat tgtaattcag aacaaactac acttgccaag 2100 tgttaactgt ctccatgaat tgtaaggaaa taaaagcttt tgaatggttt gatctaaaaa 2160 aaaaaaaaaa aaa 2173 // |
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