EBI Dbfetch

ID   BC044421; SV 1; linear; mRNA; STD; VRT; 1922 BP.
XX
AC   BC044421;
XX
DT   24-JAN-2003 (Rel. 74, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 12)
XX
DE   Danio rerio protein phosphatase 1, regulatory (inhibitor) subunit 3B, mRNA
DE   (cDNA clone MGC:55542 IMAGE:2642605), complete cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1922
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1922
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (17-JAN-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   Ensembl-Gn; ENSDARG00000044691; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000019571; Danio_rerio.
DR   ImaGenes; IMAGp998B146594Q.
DR   ImaGenes; IRAKp961N14101Q.
DR   ImaGenes; IRBOp991A0113D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
CC   cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Institute for Systems Biology
CC   http://www.systemsbiology.org
CC   contact: amadan@systemsbiology.org
CC   Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
CC   Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 101 Row: n Column: 14
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 27882076.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1922
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /strain="AB"
FT                   /mol_type="mRNA"
FT                   /clone_lib="Sugano Kawakami zebrafish DRA"
FT                   /clone="MGC:55542 IMAGE:2642605"
FT                   /tissue_type="Whole body, adult, (one male and one female,
FT                   including unfertilized eggs)"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1922
FT                   /gene="ppp1r3b"
FT                   /note="synonyms: fi66d07, wu:fi66d07, fd20c10, zgc:55542,
FT                   wu:fd20c10"
FT   CDS             107..988
FT                   /codon_start=1
FT                   /gene="ppp1r3b"
FT                   /product="protein phosphatase 1, regulatory (inhibitor)
FT                   subunit 3B"
FT                   /db_xref="GOA:Q803M0"
FT                   /db_xref="InterPro:IPR017434"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q803M0"
FT                   /db_xref="ZFIN:ZDB-GENE-030131-5496"
FT                   /protein_id="AAH44421.1"
FT                   /translation="MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSL
FT                   KEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSS
FT                   LTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKS
FT                   VKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNG
FT                   DTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWP
FT                   SYVGYEDIGPYY"
XX
SQ   Sequence 1922 BP; 598 A; 354 C; 374 G; 596 T; 0 other;
     atgaagctgc gttcacttac aagagacact gggcttgatg aagaagtttg acctaattta        60
     aatgccgtaa cacagtgcac gtagctgccc tcccaaagaa tctaccatgc ctatcgaact       120
     ggccatgtcg ctttatctgt caagcgatga gttcctgaac ccaagggcat ctaaatacag       180
     caggcccttg cagccatgtc taaaccagtg taaaagctcc aaacttagtt ttagctctct       240
     taaggagcag tccgagttca atggggtcag cagagccttg atgatacctg gcagggccaa       300
     aaaacatgtc tcttttgctg atcacaaggg cctcgctctg accgtggtga agatattctc       360
     tgaattcgat gaccccattg acatcccaga caacatcgat aattttttca cctcttcgct       420
     gactgtatca gaaggaaagg acaagttaac cctcgatttt gaccagccat ctgccgatta       480
     cttgaaattc cgtcaacgaa tagaaaatga tcatgtctgt ctcgaacact gcatgcttaa       540
     ggagaaatct ataatgggca cagtcaaagt caagaacatt tcctttgaga agtctgttaa       600
     gcttcgcatt acatttaaca cttggaagaa ccacacagat gtagaatgcc agtacgtaaa       660
     ggacacttac accggctcaa accgagacac tttttcattt gaagctagtt tgcctgaaca       720
     ggtgccctca catgaacgca tcgagttcgc tatttgctat gaggtcaatg gtgatacact       780
     ctgggataac aaccaaggaa agaattacag aatcattcag tcagcactga ggaagagttc       840
     aaatgaatct aacggtgggc atcagcaata ttcccagagc gactgggaca ttcattttga       900
     ccgatatggc agccccagat gctcccgtgg aatttttccc cattggccaa gctatgttgg       960
     atatgaagat atcggcccgt attattaaga atctactttt ggcgtggtct atcatgctcg      1020
     cttatccata agacattgta atgaatgcca cttcaaaatg acactttaaa aaacacagca      1080
     ggtttgatgt tctaatccaa gaacttgtcg gactctgaag ccatatagac tcttgagata      1140
     tttattgtta ataatggatt acattgtgca acaaaatgag tcctgttttt aaaaatactg      1200
     ttcctggtgc gatactaatg taattatgcg ggtaaatttg tttatttcta gtgcctgtca      1260
     aatgctggtt tttgcgcagg gttgtgtaaa tatttgggtt tgcgttgacc tgtaaaaata      1320
     atacaatgtt aaatagtgta agtgtcagtg aatctgcagg ccagtatgtt tgctgtaaat      1380
     catgaagaaa aatttattga catgtttgat tttttttttt tttcgagaga aagacaaatt      1440
     cctgaaggca gcatcacttg acgaacaaaa agagaagaaa tgtgttattt ccctaaaaaa      1500
     tgtgagatta gagatgaact cagtttacat acattgatgc aaattctttc atatatatat      1560
     atatttttaa tgtacaactc taaaggtatt tacatttctg tattttaatt gactatggtt      1620
     tattctcact gtaattgact gcacaacagg atattgatat tagtgattgt taatgtgtat      1680
     tataatgaca tttgttcttg gtaatgtatg cactttaatt tcttgcagtg tttaatttct      1740
     tttcacccat tttaaattgt gaatgcaggt ttgacagaac cacttgaaaa tgttgtaaaa      1800
     aagttctctc agcggtattc ggtatgttca aatgttgtgc attttaatgc aatgttttaa      1860
     atgttcatag tcattgaaaa tttcaaataa agtattagca gatgaaaaaa aaaaaaaaaa      1920
     aa                                                                     1922
//