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EBI DbfetchID BC036998; SV 1; linear; mRNA; STD; MUS; 1051 BP. XX AC BC036998; XX DT 29-AUG-2002 (Rel. 72, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 11) XX DE Mus musculus 3-hydroxybutyrate dehydrogenase, type 2, mRNA (cDNA clone DE MGC:46989 IMAGE:5041996), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1051 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1051 RG NIH MGC Project RA ; RT ; RL Submitted (23-AUG-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000183115. DR Ensembl-Gn; ENSMUSG00000028167; Mus_musculus. DR Ensembl-Tr; ENSMUST00000029817; Mus_musculus. DR Ensembl-Tr; ENSMUST00000120397; Mus_musculus. DR ImaGenes; IMAGp998I0511115Q. DR ImaGenes; IRAKp961I1781Q. DR ImaGenes; IRAVp968A1283D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 81 Row: i Column: 17 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 23956201. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1051 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Kid14" FT /clone="MGC:46989 IMAGE:5041996" FT /tissue_type="Kidney, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1051 FT /gene="Bdh2" FT misc_difference 1..8 FT /gene="Bdh2" FT /note="8 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 10..11 FT /gene="Bdh2" FT /note="in the mouse genome : AT." FT CDS 97..834 FT /codon_start=1 FT /gene="Bdh2" FT /product="3-hydroxybutyrate dehydrogenase, type 2" FT /db_xref="GOA:Q8JZV9" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR016040" FT /db_xref="MGI:1917022" FT /db_xref="UniProtKB/Swiss-Prot:Q8JZV9" FT /protein_id="AAH36998.1" FT /translation="MGRLDGKVIVLTAAAQGIGRASALAFAREGAKVIATDINESKLQE FT LESYRGIQTRVLDVTKKRQIDQFASEIERIDVLFNVAGFVHHGTILDCEEKDWDFSMNL FT NVRSMFLMIKAFLPKMLAQKSGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAA FT DFIQQGIRCNCVCPGTVDTPSLQERIQARDNPKEALKTFLNRQKTGRFASAEEVALLCV FT YLASDESAYVTGNPVIIDGGWSL" FT misc_difference 1040..1051 FT /gene="Bdh2" FT /note="polyA tail: 12 bases do not align to the mouse FT genome." XX SQ Sequence 1051 BP; 293 A; 248 C; 262 G; 248 T; 0 other; ccacgcgtcc ggtgacttct cctgcgcaga gatctgaagt ttgtctcctg aaggaatctg 60 gaggactgtg tggactcact cttctaaaga tccactatgg gccgactgga cggcaaagtt 120 attgtcctga cagctgccgc tcaagggatt ggacgggcat ccgcattagc ttttgcaaga 180 gaaggagcca aagtcatagc cacagatatc aacgagtcca aactccagga gctggaaagt 240 taccgaggta ttcaaactcg agtccttgat gtcacaaaga agagacagat tgatcagttt 300 gcctcagaaa tcgagagaat tgatgttctc tttaatgttg ctggttttgt ccaccacgga 360 accatcctgg attgcgagga aaaagactgg gacttctcaa tgaatctcaa cgtccgcagc 420 atgttcctga tgatcaaagc attccttccc aaaatgcttg ctcagaagtc aggcaacatt 480 atcaacatgt cgtctgtggc ctccagcatc aaaggggtgg agaacagatg tgtgtacagt 540 gctaccaagg cggctgtgat cggtctcacc aagtccgtgg ctgcagactt catccaacag 600 ggcatcagat gcaactgtgt gtgtccagga acggttgaca ccccatctct gcaagaaaga 660 atacaagcca gagacaatcc caaagaggca ctgaaaactt tcctaaacag acaaaagacg 720 ggaaggtttg cgtcggccga agaggtcgct ctgctctgcg tatacctggc ctcggacgag 780 tcagcctatg taactggcaa ccctgtcatc attgatgggg gctggagcct gtgaccgcga 840 ggatccctgc tgggaagaca ggcccttcct agccacggag caaagcaagc tgcctgggtg 900 atcatctctt ctgagagtga cattcatgaa aataagccct ttagtgattg ttcccgagag 960 tgtgactctt taatagtctc tcgtctcttc tgaagctgtg gtaaataaat caaataaaat 1020 gtattgattt tgtggcaaaa aaaaaaaaaa a 1051 // |
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