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EBI DbfetchID BC036015; SV 1; linear; mRNA; STD; HUM; 2825 BP. XX AC BC036015; XX DT 24-SEP-2002 (Rel. 73, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Homo sapiens exostoses (multiple)-like 2, mRNA (cDNA clone MGC:32939 DE IMAGE:5273246), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2825 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2825 RG NIH MGC Project RA ; RT ; RL Submitted (31-JUL-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000119502. DR Ensembl-Gn; ENSG00000162694; Homo_sapiens. DR Ensembl-Tr; ENST00000450240; Homo_sapiens. DR H-InvDB; HIT000051583. DR ImaGenes; IMAGp998L1511689Q. DR ImaGenes; IOH27212. DR ImaGenes; IRAKp961E1848Q. DR ImaGenes; IRATp970G0732D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Miklos Palkovits, M.D., Ph.D. CC cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki CC Toshiyuki and Piero Carninci (RIKEN) CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 48 Row: e Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 14149608. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below CC and these differences were also compared to chimpanzee genomic CC sequences available as of 09/15/2004. XX FH Key Location/Qualifiers FH FT source 1..2825 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_97" FT /clone="MGC:32939 IMAGE:5273246" FT /tissue_type="Testis" FT /note="Vector: pBluescriptR" FT /db_xref="taxon:9606" FT gene 1..2825 FT /gene="EXTL2" FT /note="synonym: EXTR2" FT misc_difference 98 FT /gene="EXTL2" FT /note="1 base in cDNA is not found in the human genome." FT CDS 265..1257 FT /codon_start=1 FT /gene="EXTL2" FT /product="exostoses (multiple)-like 2" FT /db_xref="GOA:Q8IYF4" FT /db_xref="HGNC:3516" FT /db_xref="HSSP:1OMX" FT /db_xref="InterPro:IPR015338" FT /db_xref="UniProtKB/TrEMBL:Q8IYF4" FT /protein_id="AAH36015.1" FT /translation="MRCCHICKLPGRVMGIRVLRLSLVVILVLLLVAGALTALLPSVKE FT DKMLMLRREIKSQGKSTMDSFTLIMQTYNRTDLLLKLLNHYQAVPNLHKVIVVWNNIGE FT KAPDELWNSLGPHPIPVIFKQQTANRMRNRLQVFPELETNAVLMVDDDTLISTPDLVFA FT FSVWQQFPDQIVGFVPRKHVSTSSGIYSYGSFEMQAPGSGNGDQYSMVLIGASFFNSKY FT LELFQRQPAAVHALIDDTQNCDDIAMNFIIAKHIGKTSGIFVKPVNMDNLEKETNSGYS FT GMWHRAEHALQRSYCINKLVNIYDSMPLRYSNITISQFGFPYANYKRKI" FT misc_difference 1208 FT /gene="EXTL2" FT /note="'C' in cDNA is 'T' in the human genome; amino acid FT difference: 'T' in cDNA, 'M' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 2273 FT /gene="EXTL2" FT /note="'C' in cDNA is 'T' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 2431 FT /gene="EXTL2" FT /note="'G' in cDNA is 'A' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 2635^2636 FT /gene="EXTL2" FT /note="1 base in the human genome, T, is not found in cDNA. FT The chimpanzee genome agrees with the cDNA sequence, FT suggesting that this difference is unlikely to be due to an FT artifact." FT misc_difference 2812..2825 FT /gene="EXTL2" FT /note="polyA tail: 14 bases do not align to the human FT genome." XX SQ Sequence 2825 BP; 874 A; 540 C; 530 G; 881 T; 0 other; gctccaggcg ctcactttgc gggcggcact ttttccaggt tgttaatcca gctaatggag 60 aaggatagat gcacgctact tggtttagaa aaaaaaaaca aaaatgagca aacgagacgc 120 cccttccgtt ttatgataac taagctgcag ggaaataaat cggctggccc tactgcaatc 180 tactgcactc gagtgacaag tgagcctgct tctgtcaatt actgaagcta taaggagatt 240 ttttaaaaat taaacttcaa cacaatgagg tgttgccaca tctgcaaact tcctgggaga 300 gtaatgggga ttcgagtgct tcgattatct ttggtggtca tcctcgtatt attactggta 360 gctggtgctt tgactgcctt acttcccagt gttaaagaag acaagatgct catgttgcgt 420 agggaaataa aatcccaggg caagtccacc atggactcct ttactctcat aatgcagacg 480 tacaacagaa cagatctctt attgaaactt ttaaatcatt atcaggctgt accaaatctg 540 cacaaagtga ttgtggtatg gaacaatatt ggagagaagg caccagatga attatggaat 600 tctctagggc cccaccctat ccctgtgatc ttcaaacaac agacagcaaa caggatgaga 660 aatcgactcc aggtctttcc tgaactggaa accaatgcag tgttgatggt agatgatgac 720 acactcatca gcaccccaga ccttgttttt gctttctcag tttggcagca atttcctgat 780 caaattgtag gatttgttcc tagaaagcac gtctctactt catcaggtat ctacagttat 840 ggaagttttg aaatgcaagc accagggtct ggaaatggtg accagtactc tatggtgctg 900 attggagcct cattcttcaa tagcaaatat cttgaattat ttcagaggca acctgcagct 960 gtccatgctt tgatagatga tactcaaaac tgtgatgata ttgccatgaa ttttatcatt 1020 gccaagcata ttggcaagac ttcagggata tttgtgaagc ctgtaaacat ggacaatttg 1080 gaaaaagaaa ccaacagtgg ctattctgga atgtggcatc gagctgagca cgctctgcag 1140 aggtcttatt gtataaataa gcttgttaat atctatgata gcatgccctt aagatactcc 1200 aacattacga tttcccagtt tggttttcca tatgccaact acaaaagaaa aatataaaag 1260 taaaacaaac aaaaacaaac ctgaaaactg cttggcattt gagtagcttc tccatgctat 1320 gtattttttt aagcaacatc atgaatttta tctactccag aagtctctac aatagaaaaa 1380 aaagtgcagt gcttctagga tataaaattc acattacttt tgaaagccaa gaagttggtc 1440 ttatccagtt aggtcttctt atgaagagtt ttcatccagg gatataactc cttggtcagt 1500 gattttattg tttacatcct gagactgttc tacagtttct ttgactcctg gcatttgcct 1560 taaggaccta tagcaagctg tttctaggat cagaaactca agagaggcat ttctctgctt 1620 tttcactaaa ggtcagttgt tttaatttga aacctgaaat gcctctttag caaaagcctg 1680 tggtatgggg taaagccatg taagaagaga atagtctcag tcacatatga agaggaaaat 1740 ttgcagctgc cagtgctttc cttgtggccc tgccaaccag ctcttccagg acgaactcag 1800 tccagcatgg ttttgatgta accatccatg cttttatttt tgttaagtct tttgtgactg 1860 ggacagttaa ttttagtagc tgaagaacgt ctagttgttt gcttgatatt tgtgaacatt 1920 tactgcatgg atcacaaaac aatataccct gtatttctta cacgccactt atatgcagca 1980 aggagtaaat gtgttactag attcgggtag tgcattttgt cactgaatct gaccttgaga 2040 atgtacatta attcttatat tttacataat gtatgtgttg tttaagaaat gtataaaaaa 2100 cctgaaaaaa atgagtaaga actggcagaa gttaaaaccc tttgtatcaa aagatcttta 2160 ttggtagagc actggttatc ttctggatac taaaaagttg tattacaaag ccaaacactt 2220 gcattcacaa ctttaaaaaa agatccaagg aactattcat aatgatgaaa ttccaactac 2280 atacaaggag gagaaaataa gaacccagtc ataacagagg aattctatag gagtctgcat 2340 caattcattc ttaaggttgc ctactctctg ttatgtgaat tagcgtctgt gtttcaccca 2400 ttgtctgtgt ttagtccttg ttcaccacta gggcaaggaa ttcttaacta ggcctctgtt 2460 taccaacttc tctttctcct cctttccctc ttattcctcc ttctcctctt ccttcttata 2520 taatgctagt atattctcaa aattgcaaag ctgtgagaat attaaaataa tcatggctaa 2580 tgttccaata atgaggtctt tgtgcattta gttccgcata tgatggtttt tttttacatt 2640 aaagagtata tgtgtcttaa tgcagtcaga ttgtaaaaaa caaaaacaaa gaaactaaga 2700 atcttactaa aaatcgataa tgtcagttat ctgttttgtc caatattggt agtacttttt 2760 tgcctcttat gattcctcta gcagataaat aaaagaaact tttgccatcc aaaaaaaaaa 2820 aaaaa 2825 // |
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