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EBI DbfetchID BC034651; SV 1; linear; mRNA; STD; MUS; 3299 BP. XX AC BC034651; XX DT 28-JUL-2002 (Rel. 72, Created) DT 05-NOV-2008 (Rel. 97, Last updated, Version 8) XX DE Mus musculus synaptic vesicle glycoprotein 2 b, mRNA (cDNA clone DE IMAGE:5358625), partial cds. XX KW . XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-3299 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3299 RG NIH MGC Project RA ; RT ; RL Submitted (24-JUL-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000136371. DR ASTD; TRAN00000136372. DR Ensembl-Gn; ENSMUSG00000053025; Mus_musculus. DR Ensembl-Tr; ENSMUST00000085164; Mus_musculus. DR ImaGenes; IMAGp998B0211912Q. DR ImaGenes; IRAKp961I0454Q. DR ImaGenes; IRAVp968F0367D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: The Cepko Laboratory CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 54 Row: i Column: 4. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 37) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3299 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_94" FT /clone="IMAGE:5358625" FT /tissue_type="Eye, retina, mouse strain C57Bl\6" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene <1..3299 FT /gene="Sv2b" FT /note="synonym: mKIAA0735" FT CDS <1..552 FT /codon_start=1 FT /gene="Sv2b" FT /product="Sv2b protein" FT /db_xref="GOA:Q8JZZ9" FT /db_xref="InterPro:IPR005988" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="MGI:1927338" FT /db_xref="UniProtKB/TrEMBL:Q8JZZ9" FT /protein_id="AAH34651.2" FT /translation="PFWSRKVELINRQLMNSTFLEQKEGCHMDFEEDNDFLIYLVSFLG FT SLSVLPGNIISALLMDRIGRLKMIGGSMLISAVCCFFLFFGNSESAMIGWQCLFCGTSI FT AAWNALDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITKVVPILLAAAS FT LVGGGLIALRLPETREQVLM" FT misc_difference 1..24 FT /gene="Sv2b" FT /note="24 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 27 FT /gene="Sv2b" FT /note="'G' in cDNA is 'C' in the mouse genome." FT misc_difference 30 FT /gene="Sv2b" FT /note="'A' in cDNA is 'C' in the mouse genome." FT misc_difference 34 FT /gene="Sv2b" FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 36 FT /gene="Sv2b" FT /note="'A' in cDNA is 'T' in the mouse genome." FT misc_difference 38 FT /gene="Sv2b" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 42 FT /gene="Sv2b" FT /note="'G' in cDNA is 'T' in the mouse genome." FT misc_difference 45 FT /gene="Sv2b" FT /note="'G' in cDNA is 'C' in the mouse genome." FT misc_difference 48 FT /gene="Sv2b" FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 3254..3299 FT /gene="Sv2b" FT /note="polyA tail: 46 bases do not align to the mouse FT genome." XX SQ Sequence 3299 BP; 883 A; 698 C; 743 G; 975 T; 0 other; cctttctgga gcagaaaggt ggaattgata aaccgacagt tgatgaactc cacctttctg 60 gagcagaagg agggctgcca catggacttt gaagaggaca atgattttct gatttacctc 120 gtcagcttcc tcggcagcct ctctgtcttg cctgggaaca taatttctgc cctgctcatg 180 gacagaattg gaagactcaa gatgattggc ggctccatgc tcatctctgc agtctgctgc 240 ttcttcctgt tttttggcaa cagcgagtct gcgatgatcg gctggcaatg cctgttctgt 300 gggaccagca ttgcagcctg gaatgctctg gatgtgatca cagttgagct gtatcccacc 360 aaccagaggg ccacggcctt cggcatcctc aacggactgt gcaagtttgg ggccatcctg 420 ggaaacacta tctttgcttc ttttgttggg ataaccaaag tggtccccat ccttctggct 480 gctgcttctc tggttggagg tggcctgatt gcccttcgat tgccagagac tcgagagcaa 540 gtcctgatgt gaccaaccca ccgggaaaag acagatggga agatcttttt caggacactc 600 cagcacagcc acgcctcctg cctctcactg tctacaggat accgcggaca gcacggaagg 660 agaaatggac tttgtgatcc ctagtttagg acccactgca gttgttaata catttttaac 720 tcaggtgatt gactaggggt gcccagaacc atccttggga tcccagagct gtgtgcttag 780 cttcaggtct cttcatccca ggcagggaga ggacactcca gtaaacacac acagtaagca 840 aggagtatat gctcctctaa atgaggtgca aaaaactatt tgcatttcgg actgaagttg 900 aggactagaa ccacttaagc tcctccatgc agcttctggg agcccagtga cctagcagat 960 tgtcatagtg gggagtgggg tcaacacata ctgggctcag agagcagact acgtatttgc 1020 atttgaaagt atcacctatc atattttcct tttgaaaact ggcacagtag ccttgaggat 1080 actctgatat agaaaaaccc aacctttaag caaaatgtat atagacggac ttttcttccc 1140 aagcatcctg aactttgcat aacgaagagg tgatacacta agaactatat ttattatggt 1200 tttgctcttg tcagagcaac gtgaggatgg gtattatgta aactaagttt gtatataaga 1260 gttttgaggt tttattccca caaatggtgg ctgctaaggt tgccaacatt ttagccatat 1320 ttggggagga ctctccattc aaggtcgcag gaaacttggt gcgaatgggt agcatcttgc 1380 ttgctgtccg gaggatgtac ttggcaagcc acgtgccatt tcctttacct gggaactttt 1440 cttcaaattg gtagggcagg tacttctctc tcctgtgttg ctcatttgtg aaactcagga 1500 ccataggttg tttgatgctg tttacccaga gagaacagga agaaatgaaa tgaaaatgtt 1560 tttattttta ttattggctg cttgcactcc ttttctttag agagaacccc ctcacagata 1620 actgactaag gatggggaaa ggtaaccaca gttcttcaaa atgtgagttc ttcctgtttg 1680 atttcaaaga aaaacacaat gtacatttat tatagtgttt aggacctatg agaaatttat 1740 gctctgtgtg ttggctcggg gcgttcgaaa caggccatta gcatgcacat taggaaataa 1800 aaggcatgag atacattcgt ttcttcattg ctccaaggaa gctttttctg agatccaggt 1860 tggaacttga atgtggaaag gggagagggg gtcagggctg ctctggcagg tgccagcagt 1920 ctggaggcta ggctgaggga gtggcttttg ttcatcagta ccctctgcaa tggtagagac 1980 agagctagga gttcctgcca cctgagctgc tcttacctgg gccagcagaa cgactgactg 2040 actgactgta agaactagtt tgctcacgtt atttgcagca cacacacaag ctgtgatgtg 2100 ctaatctcta cctattagaa atcttcccaa atctaaacca aactaatgac tacattgagt 2160 gttttctcag ttctgtggaa atacttagat gccaggccag ttcaagccat ctttgcctag 2220 tcctctggaa tataagttgg cagtgggaaa gagtgaaatc tttgagaact tcccattttc 2280 aagtgtggct aacatgttta ctctgcttct ctggtcccca cctctttatt tacaccacca 2340 ttactttctg tccagggaag gaagatgcat caggtctgat gtgataaccc ccattactcc 2400 aaatataaat atatataaat atacagaatg tattaatgct tctctcggtg ttttatagga 2460 attaactgat aacgctctgt tgataacgag aaactttctg taatatagct gtgatgtcct 2520 tttccatttt cttgtgatat ggaatgcatt gcttaggatc atgagagaat tgtataaatc 2580 tgtggttatg tatccctcat aacagtgttc tttaatggga taatagacct cagtgctcag 2640 ctaccactca agaaatgtac gagacagtta gaatccacat ttacagtcag atatatcttg 2700 taaactttaa atctgactaa tttttaaagc acaggagtgg ctgcagttat tttaggctaa 2760 ctgttcttgg tttctaagct ctgtcttcta cattacattt atggctcctt aacctgtttg 2820 cctaaccaac caagggcaat tcccgtccat ccatcacacg ggatgtgaga aggatgcagc 2880 catggtctgc agcctctctc atgaagggtt atctggccat ggtacttggc tgcttcataa 2940 cttgctgtca ctcctgatga gataagtgtg tctttaaaaa tagtccccgt gtcaggtcac 3000 tggggtgtaa tgtacaacat ccttagccat ccattttttc ttttcttttt ttttgccctg 3060 agagactccc aatggcatct atagaggact aaagaagaga gccgttccct cactgagtca 3120 gactgttcac agttcattat gtattttatg atggcttgtt tgggagccga tactttcagc 3180 agtctcaact gtgttgtggg atctcctgat gctggtttct gagcttttgt tttattaaaa 3240 ctgattagtg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa 3299 // |
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