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EBI DbfetchID BC030162; SV 2; linear; mRNA; STD; HUM; 3606 BP. XX AC BC030162; XX DT 26-MAY-2002 (Rel. 71, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 9) XX DE Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 18, mRNA (cDNA clone DE MGC:29463 IMAGE:5020970), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3606 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3606 RG NIH MGC Project RA ; RT ; RL Submitted (07-MAY-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000083119. DR Ensembl-Gn; ENSG00000170464; Homo_sapiens. DR Ensembl-Tr; ENST00000302060; Homo_sapiens. DR H-InvDB; HIT000040971. DR ImaGenes; IMAGp958M031838Q. DR ImaGenes; IRALp962N1239Q. DR ImaGenes; IRAUp969A1180D. XX CC On Dec 19, 2003 this sequence version replaced gi:20987346. CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: ATCC CC cDNA Library Preparation: Rubin Laboratory CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAL Plate: 39 Row: n Column: 12 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 51871334. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3606 FT /organism="Homo sapiens" FT /lab_host="DH10B-R" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_17" FT /clone="MGC:29463 IMAGE:5020970" FT /tissue_type="Muscle, rhabdomyosarcoma" FT /note="Vector: pOTB7" FT /db_xref="taxon:9606" FT gene 1..3606 FT /gene="DNAJC18" FT /note="synonym: MGC29463" FT CDS 6..1082 FT /codon_start=1 FT /gene="DNAJC18" FT /product="DnaJ (Hsp40) homolog, subfamily C, member 18" FT /db_xref="GOA:Q9H819" FT /db_xref="HGNC:28429" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003095" FT /db_xref="InterPro:IPR015399" FT /db_xref="InterPro:IPR015609" FT /db_xref="InterPro:IPR018253" FT /db_xref="UniProtKB/Swiss-Prot:Q9H819" FT /protein_id="AAH30162.1" FT /translation="MAATLGSGERWTEAYIDAVRRNKYPEDTPPESHDPCGCCNCMKAQ FT KEKKSENEWTQTRQGEGNSTYSEEQLLGVQRIKKCRNYYEILGVSRDASDEELKKAYRK FT LALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLRYDEYGDEQVTFTAPRARPYNYY FT RDFEADITPEELFNVFFGGHFPTGNIHMFSNVTDDTYYYRRRHRHERTQTQKEEEEEKP FT QTTYSAFIQLLPVLVIVIISVITQLLATNPPYSLFYKSTLGYTISRETQNLQVPYFVDK FT NFDKAYRGASLHDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLKQKAESL FT KLENCEKLSKLIGLRRGG" FT misc_difference 203 FT /gene="DNAJC18" FT /note="'C' in cDNA is 'T' in the human genome; no amino FT acid change." FT misc_difference 3459 FT /gene="DNAJC18" FT /note="'G' in cDNA is 'A' in the human genome." FT misc_difference 3540..3606 FT /gene="DNAJC18" FT /note="polyA tail: 67 bases do not align to the human FT genome." XX SQ Sequence 3606 BP; 1058 A; 818 C; 807 G; 923 T; 0 other; ccgatatggc ggcgactctg ggcagcgggg agcgctggac ggaagcttac attgacgcag 60 ttagaagaaa caaataccca gaagacacac ctcctgagag tcatgacccc tgtggctgct 120 gtaactgcat gaaggcacaa aaggaaaaga agtctgagaa tgagtggact cagacccggc 180 agggtgaggg gaactccacg tacagtgagg aacagctgct tggggtacaa aggatcaaga 240 aatgcagaaa ttactatgaa attctgggag tttctcgaga tgctagtgac gaagagctta 300 agaaagctta cagaaaactc gccctgaaat ttcaccctga caagaactgt gctcctggag 360 caacagatgc tttcaaagca ataggaaatg catttgcagt cctgagcaat cctgataaga 420 gacttcgcta tgatgaatac ggagatgaac aggtgacttt cactgcccct cgagccagac 480 cttataatta ttacagggat tttgaagctg acatcactcc agaagagctg ttcaacgtct 540 tctttggagg acattttcct acaggaaata ttcatatgtt ttcaaatgtg acagatgaca 600 cttactatta ccgtcgacgg caccgacatg agaggacaca gactcagaag gaggaggaag 660 aagagaaacc tcagactaca tattctgcat ttattcagct acttccagtt cttgtgattg 720 tgattatatc tgtcattact cagctgctgg ctactaatcc cccatatagt ctgttctata 780 aatcgacctt gggctacacc atttctagag aaactcagaa cctgcaggtg ccttactttg 840 tggataaaaa ctttgacaag gcctacagag gagcttctct gcatgacttg gagaaaacaa 900 tagagaagga ttacattgat tatatccaga ctagttgttg gaaggagaaa caacaaaagt 960 cagagctgac aaatttggca ggattataca gagatgaacg attgaaacag aaagcagagt 1020 cgctgaaact tgaaaactgt gagaaacttt ccaaactcat tggcctacgc agaggtggct 1080 gagaggataa tggtcctacg cagggctggg gttttgctac ttgttcctat ttatgttcct 1140 gattccattt tataatacaa aactaggtaa tgatgaacac tttactattt gctaacttcg 1200 ttggttgggc agagtggcag gagcatgggc acgagagcca gatgtgtctt cacaggatcc 1260 ttcctgggga gtggctccag ggaccaggag tagttcatct aagttaaatt aatggcaagg 1320 cattggattc cgtctccctg ctccatgcct accctgccta tgtgaatgga gttcagggca 1380 tcccagagca gatccatgct ttcttccttc ttcccttctt cagtgaagtc ttaagaacca 1440 ggcattccta ggcttagcca aagcttaata ttagttattt acactgtcta ccaagaatta 1500 tacctctccc ttcattagag tcatcatctc cgccaagatt tagcctttgg aacatgttcc 1560 tgcccagctt tccattttct aggggaatat ggagaaattt aaactattgt agtcaatagt 1620 tttctattat tccaatctct gctcagttag tagcattagc aaactgccta atttgagatt 1680 cctttatttc cttaaccctc tctcctttag agagtccaga aattaaaact actgagcagc 1740 atctggaggc gggggccagg gcgaaggtat aatgcaagac cgagcctcat ctcctccacg 1800 aagcctccct actccatcat agaacccaga gaatgtccct tcggtcattt cccctcagta 1860 tcatcattgg tgtcatcgca cttaggctga gttcctacat cccacagagg cagatggtca 1920 gacccaggag gaggcattgc cagctctcca ggctgtttgc tcaagcctag agatagagga 1980 gacagatcct ctctccttgg atatgggggt ctagctttgg ccccagcagc cactttgttt 2040 aacccagtat cctatagttt gtgatttgag atgatttttc attcattcaa catttattga 2100 gtgcctacta taaaagcagg ggctctcaca catattttct tacttaaacc tcctcacaac 2160 tctgaagtag atgtattatc cctggttcta tgaatgagaa cattggccca gagaggatga 2220 cccaggtctt gtagtggcag agcaagacgg taggctgagt gtcaagtaga aagtgggaga 2280 gcatcctcat gtctcaggtg attctagcca gactggcaaa gcagaacctt tcccgaggat 2340 gcctccgtcc tccccaaccc catgacccct catcttttct gtggcaatct tgcatctgtt 2400 caggacaaca tccctgctgc tctttaggaa gcaggaccct gtctaacata aattctgtac 2460 acaaaataag aggtccctca caggcaggca gccctccact ggtgactagg aagaattcag 2520 tcactgcctg ggctgtgtgg ttctgggcct tcctgtggag ctgagctgcc tgaattatca 2580 tgactctgaa cttggaagga tcattaagtg actgtagcct acactccatg cttccttcat 2640 attggaagaa aagtttctgg tagagagtcg gccgggtgca ctggctcaag cctgtaatcc 2700 cagcactttg ggaggctgtg gcaggtggat cacctgaggt caggagttca agaccagcct 2760 ggccaacaca gtgaaacccc atctctacta ataatacaaa aattagccag gtgtggtggc 2820 acatgcctgt agtcccagct actcgggagg ctgaggcatg agaatcgctg caacttgcaa 2880 ggtggaggtt acagtgagct gaaatcacgc cactgcactc cactccatct caaaaaaaaa 2940 aagagtctac attaaacaga ttccaaagta aagtttcttc atcccaatgc atggccatga 3000 tttacacaga cgtgcctagc atggctcatc aacatctgaa cggttgttcc ctaccatgcc 3060 tctgcaggca ttccacagag tcaggagatg ggttcacagg taaagattgg gggctttagt 3120 ggcttgtagg ggacaactgc tcagttgcag ggagagggag catttctaga aatagccaga 3180 ttttgctgcc caactagatc tgtcctcctg gttttagggg gcccttcttg atcccctctg 3240 agtgactgag ggaggttaca ttgtaaaata tgtccatgag ccaaacaggc ttatggaaag 3300 ttcttctaca cacaaaaaaa tcaaagctct cctctcccca tccccaacca ctgctagaaa 3360 attggccata atgaaactga cttgacaggt taaaagaccc tgtcctagat gcccaggaat 3420 caggtagtca cacattttat ggacttcatg gcagcgatga gtaatctgtg atgatactaa 3480 atagaagcaa taataactaa ctccattaaa tgtcacgctg attgtctgtt tttatagcaa 3540 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3600 aaaaaa 3606 // |
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