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EBI DbfetchID BC029521; SV 1; linear; mRNA; STD; HUM; 1082 BP. XX AC BC029521; XX DT 25-MAY-2002 (Rel. 71, Created) DT 18-JUL-2006 (Rel. 88, Last updated, Version 14) XX DE Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 8, mRNA (cDNA clone DE MGC:33884 IMAGE:5296554), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-1082 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1082 RG NIH MGC Project RA ; RT ; RL Submitted (01-MAY-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR H-InvDB; HIT000040799. DR ImaGenes; IMAGp998G1911750Q. DR ImaGenes; IRAKp961L1648Q. DR ImaGenes; IRATp970C0333D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Miklos Palkovits, M.D., Ph.D. CC cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki CC Toshiyuki and Piero Carninci (RIKEN) CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 48 Row: l Column: 16 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 46094077. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below CC and these differences were also compared to chimpanzee genomic CC sequences available as of 09/15/2004. XX FH Key Location/Qualifiers FH FT source 1..1082 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_97" FT /clone="MGC:33884 IMAGE:5296554" FT /tissue_type="Testis" FT /note="Vector: pBluescriptR" FT /db_xref="taxon:9606" FT gene 1..1082 FT /gene="DNAJB8" FT /note="synonym: MGC33884" FT misc_difference 2 FT /gene="DNAJB8" FT /note="'G' in cDNA is 'C' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT CDS 255..953 FT /codon_start=1 FT /gene="DNAJB8" FT /product="DnaJ (Hsp40) homolog, subfamily B, member 8" FT /db_xref="GDB:11513595" FT /db_xref="GOA:Q8NHS0" FT /db_xref="HGNC:23699" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR015609" FT /db_xref="InterPro:IPR018253" FT /db_xref="PDB:2DMX" FT /db_xref="UniProtKB/Swiss-Prot:Q8NHS0" FT /protein_id="AAH29521.1" FT /translation="MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKK FT FKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGASTPYHSPFDTGYTFRNPEDIFREFF FT GGLDPFSFEFWDSPFNSDRGGRGHGLRGAFSAGFGEFPAFMEAFSSFNMLGCSGGSHTT FT FSSTSFGGSSSGSSGFKSVMSSTEMINGHKVTTKRIVENGQERVEVEEDGQLKSVTVNG FT KEQLKWMDSK" FT misc_difference 566 FT /gene="DNAJB8" FT /note="'C' in cDNA is 'T' in the human genome; no amino FT acid change. The chimpanzee genome agrees with the cDNA FT sequence, suggesting that this difference is unlikely to be FT due to an artifact." FT misc_difference 1066 FT /gene="DNAJB8" FT /note="'A' in cDNA is 'G' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 1069..1082 FT /gene="DNAJB8" FT /note="polyA tail: 14 bases do not align to the human FT genome." XX SQ Sequence 1082 BP; 224 A; 348 C; 310 G; 200 T; 0 other; ggctggcccc acagcggcag tgtccctccc ctccccccac tcctctcagt gggggcccct 60 ccagtccctg agaattggta ctacgaaaag gtgaactcct gggcagaatc ttgcctagag 120 cttgcggagt ccagccaggc ccctgctgaa gggccccaga ccaccggcca cttctccccc 180 gtccatctga ccagctgggc ccctgcgccc acctggcctc cacgttccct ctcctctcac 240 ccacacccct ggccatggct aactactacg aagtgctggg cgtgcaggcc agcgcttccc 300 cggaggacat caagaaagcc taccgcaagc tggcccttcg ttggcacccc gacaagaacc 360 ctgacaataa ggaggaggcg gagaagaagt tcaagctggt gtctgaggcc tatgaggttc 420 tgtctgactc caagaaacgc tccctgtatg accgtgctgg ctgtgacagc tggcgggctg 480 gtggcggggc cagcacgccc taccacagcc ccttcgacac cggctacacc ttccgtaacc 540 ctgaggacat cttccgggag tttttcggtg gcctggaccc tttctccttt gagttctggg 600 acagcccatt caatagtgac cgtggtggcc ggggccatgg cctgaggggg gccttctcgg 660 caggctttgg agaatttccg gccttcatgg aggccttctc atccttcaac atgctgggct 720 gcagcggggg cagccacacc accttctcat ccacctcctt cgggggctcc agttctggca 780 gctcggggtt caagtcggtg atgtcgtcca ccgagatgat caatggccac aaggtcacca 840 ccaagcgcat cgtggagaac gggcaggagc gcgtggaggt ggaggaagac gggcagctca 900 agtcggtgac tgtgaacggc aaggagcagc tcaaatggat ggacagcaag taggcgctgg 960 ccacccggcc ctgccttccc accaccacca ccgtgcatgg ggcagcaaac acgtggggcc 1020 gcagacatag cctgatggtt aataaatgtg ccaagtgagt tcatgacaaa aaaaaaaaaa 1080 aa 1082 // |
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