 |
|
EBI DbfetchID BC027279; SV 1; linear; mRNA; STD; MUS; 878 BP. XX AC BC027279; XX DT 09-APR-2002 (Rel. 71, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 15) XX DE Mus musculus biliverdin reductase B (flavin reductase (NADPH)), mRNA (cDNA DE clone MGC:27866 IMAGE:3492861), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-878 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-878 RG NIH MGC Project RA ; RT ; RL Submitted (04-APR-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000176538. DR Ensembl-Gn; ENSMUSG00000040466; Mus_musculus. DR Ensembl-Tr; ENSMUST00000108357; Mus_musculus. DR ImaGenes; IMAGp998E228539Q. DR ImaGenes; IRAKp961H1235Q. DR ImaGenes; IRAVp968D0752D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 35 Row: h Column: 12 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Similarity but not CC identity to protein. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..878 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="Czech II" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Lu29" FT /clone="MGC:27866 IMAGE:3492861" FT /tissue_type="Mammary tumor metastatized to lung. Tumor FT arose spontaneously from a senescent normal mammary FT (clonal) outgrowth infected with the virus MMTV." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..878 FT /gene="Blvrb" FT /note="synonyms: MGC27866, MGC11726" FT misc_difference 13..14 FT /gene="Blvrb" FT /note="in the mouse genome : GC." FT misc_difference 105 FT /gene="Blvrb" FT /note="'A' in cDNA is 'G' in the mouse genome." FT CDS 141..761 FT /codon_start=1 FT /gene="Blvrb" FT /product="biliverdin reductase B (flavin reductase FT (NADPH))" FT /db_xref="GOA:Q923D2" FT /db_xref="HSSP:1HDO" FT /db_xref="InterPro:IPR016040" FT /db_xref="MGI:2385271" FT /db_xref="UniProtKB/Swiss-Prot:Q923D2" FT /protein_id="AAH27279.1" FT /translation="MTVKKIAIFGATGRTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP FT QPAHVVVGDVRQAADVDKTVAGQEAVIVLLGTGNDLSPTTVMSEGTRNIVTAMKAHGVD FT KVVACTSAFLLWDPTKVPPRLQDVTDDHIRMHKILQESGLKYVAVMPPHIGDQPLTGAY FT TVTLDGRGPSRVISKHDLGHFMLRCLTTNEYDGHTTYPSHQYD" FT misc_difference 263 FT /gene="Blvrb" FT /note="'A' in cDNA is 'G' in the mouse genome; no amino FT acid change." FT misc_difference 632 FT /gene="Blvrb" FT /note="'G' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 758 FT /gene="Blvrb" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 765 FT /gene="Blvrb" FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 788 FT /gene="Blvrb" FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 796 FT /gene="Blvrb" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 838 FT /gene="Blvrb" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 841 FT /gene="Blvrb" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 866..878 FT /gene="Blvrb" FT /note="polyA tail: 13 bases do not align to the mouse FT genome." XX SQ Sequence 878 BP; 210 A; 259 C; 252 G; 157 T; 0 other; ggtgaggcgg agagtggaac cttgtctggt cccgccccct ccttctgggt cgaggaggac 60 ccgcagcgcg cctcctcgca gccactgtgt tcccgcgcgt cctcagagtt ctcagctttt 120 ccggccctgg accccgcagc atgactgtca agaagatcgc gatcttcggt gccaccggca 180 ggaccgggct caccacactg gcgcaggcgg tgcaagcagg ttatgaggtg acggtgctgg 240 ttcgagactc cagcaggctg ccatcagaag gaccccagcc agcccatgtg gtggtgggag 300 atgttcggca ggcggccgat gtggacaaga ctgtggctgg gcaggaagct gtcatcgtgc 360 tactgggcac tggcaacgac ctcagtccca ctacagtaat gtccgagggc acccggaaca 420 tcgtgacagc catgaaggca catggagtgg acaaggtcgt ggcctgcacc tcggccttcc 480 tactatggga cccgaccaag gtgcccccac gcctgcagga cgtgaccgat gaccacatcc 540 ggatgcataa gattctgcaa gagtcagggc tgaaatacgt ggcagtgatg cccccacaca 600 taggagacca accactaact ggggcctaca cggtgaccct ggatggacga gggccctcga 660 gggtcatatc caagcatgac ctgggccact tcatgctacg gtgcctcacc accaatgagt 720 atgacggaca caccacctac ccctcccacc agtatgatta gcaccctgac ctaggtgggg 780 agggtcacgc atcctaagaa atgacacaaa tagaggggtc aataaatttt tagccaagag 840 tttcaaattc tttcaggaag cctaaaaaaa aaaaaaaa 878 // |
|