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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC024615; SV 1; linear; mRNA; STD; MUS; 631 BP.
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AC   BC024615;
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DT   14-MAR-2002 (Rel. 71, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 16)
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DE   Mus musculus RIKEN cDNA 1110008P14 gene, mRNA (cDNA clone MGC:19388
DE   IMAGE:2812475), complete cds.
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KW   MGC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
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RN   [1]
RP   1-631
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-631
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000123481.
DR   Ensembl-Gn; ENSMUSG00000039195; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000048792; Mus_musculus.
DR   ImaGenes; IMAGp998H126961Q.
DR   ImaGenes; IRAKp961B2023Q.
DR   ImaGenes; IRAVp968E1045D.
DR   ImaGenes; RZPDp981E06109D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Baylor College of Medicine Human Genome
CC   Sequencing Center
CC   Center code: BCM-HGSC
CC   Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC   Contact: amg@bcm.tmc.edu
CC   Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC   Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC   A.N., Gibbs, R.A.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 23 Row: b Column: 20
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 37574083.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..631
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="mix FVB/N, C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Mam5"
FT                   /clone="MGC:19388 IMAGE:2812475"
FT                   /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months
FT                   old, gross tissue."
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   gene            1..631
FT                   /gene="1110008P14Rik"
FT   misc_difference 111^112
FT                   /gene="1110008P14Rik"
FT                   /note="2 bases in the mouse genome, GC, are not found in
FT                   cDNA."
FT   CDS             113..364
FT                   /codon_start=1
FT                   /gene="1110008P14Rik"
FT                   /product="RIKEN cDNA 1110008P14 gene"
FT                   /db_xref="InterPro:IPR005374"
FT                   /db_xref="MGI:1920987"
FT                   /db_xref="UniProtKB/Swiss-Prot:P58686"
FT                   /protein_id="AAH24615.1"
FT                   /translation="MSGPNGDLGMPVDAGTEGENDSFGEAEYAAINSMLDQINSCLDHL
FT                   EEKNDHLHARLQELLESNRQTRLEFQQQLGEAPGDASP"
FT   misc_difference 618..631
FT                   /gene="1110008P14Rik"
FT                   /note="polyA tail: 14 bases do not align to the mouse
FT                   genome."
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SQ   Sequence 631 BP; 131 A; 214 C; 162 G; 124 T; 0 other;
     cgcttccggc ccggtgctca accagctgct cgcaccttcc gcccagcgcc ggctttccgc        60
     gcgacgatcg ccaagttcca tcttcgcgtg gcctctgcgg cgcccgagcc caatgtcggg       120
     ccccaacggg gacctaggca tgccggtgga tgcgggcacg gaaggagaga atgacagctt       180
     cggggaagca gagtatgctg ccatcaactc catgttggat cagatcaact cttgtctgga       240
     ccacctggag gagaagaatg accacctcca tgcccgcctc caggagctgc tggagtcgaa       300
     ccggcagacg cgcctggaat tccagcaaca gcttggggag gcccctggcg atgccagccc       360
     ctaggtgccg ggagccccca tccaggccct accctcacct ctctaggcca tgttctggcc       420
     tgggtagata ctacttggct tagacaccat ctcgggtact ggcctccaga tcctagtggg       480
     tctaccagcc tggaccagtc cccattcact gcccatcacc cttcctggag tcaggtgcaa       540
     tcctacagtt ctcccacttg tctgtcttct ttcccctcca tccagactga gagtccgaat       600
     taaagatgtc tcccacaaaa aaaaaaaaaa a                                      631
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