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EBI DbfetchID BC024015; SV 2; linear; mRNA; STD; HUM; 3954 BP. XX AC BC024015; XX DT 12-FEB-2002 (Rel. 70, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Homo sapiens C1q and tumor necrosis factor related protein 7, mRNA (cDNA DE clone MGC:26966 IMAGE:4823626), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3954 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3954 RG NIH MGC Project RA ; RT ; RL Submitted (07-FEB-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000066187. DR Ensembl-Gn; ENSG00000163145; Homo_sapiens. DR Ensembl-Tr; ENST00000382383; Homo_sapiens. DR H-InvDB; HIT000039724. DR ImaGenes; IMAGp998N1110733Q. DR ImaGenes; IRAKp961G1233Q. DR ImaGenes; IRATp970G0525D. XX CC On Aug 25, 2003 this sequence version replaced gi:18645143. CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Miklos Palkovits, M.D., Ph.D. CC cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki CC Toshiyuki and Piero Carninci (RIKEN) CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 33 Row: g Column: 12 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 34222147. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below CC and these differences were also compared to chimpanzee genomic CC sequences available as of 09/15/2004. XX FH Key Location/Qualifiers FH FT source 1..3954 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_97" FT /clone="MGC:26966 IMAGE:4823626" FT /tissue_type="Testis" FT /note="Vector: pBluescriptR" FT /db_xref="taxon:9606" FT gene 1..3954 FT /gene="C1QTNF7" FT /note="synonyms: CTRP7, ZACRP7" FT misc_difference 5 FT /gene="C1QTNF7" FT /note="'T' in cDNA is 'A' in the human genome. The FT chimpanzee genome agrees with the human genomic sequence FT and not the cDNA." FT CDS 229..1098 FT /codon_start=1 FT /gene="C1QTNF7" FT /product="C1q and tumor necrosis factor related protein 7" FT /db_xref="GDB:11505714" FT /db_xref="GOA:Q9BXJ2" FT /db_xref="HGNC:14342" FT /db_xref="HSSP:1C28" FT /db_xref="InterPro:IPR008983" FT /db_xref="UniProtKB/Swiss-Prot:Q9BXJ2" FT /protein_id="AAH24015.1" FT /translation="MFVLLYVTSFAICASGQPRGNQLKGENYSPRYICSIPGLPGPPGP FT PGANGSPGPHGRIGLPGRDGRDGRKGEKGEKGTAGLRGKTGPLGLAGEKGDQGETGKKG FT PIGPEGEKGEVGPIGPPGPKGDRGEQGDPGLPGVCRCGSIVLKSAFSVGITTSYPEERL FT PIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDITLANKHLAIGLVHNGQYRIKTFD FT ANTGNHDVASGSTVIYLQPEDEVWLEIFFTDQNGLFSDPGWADSLFSGFLLYVDTDYLD FT SISEDDEL" FT misc_difference 1403 FT /gene="C1QTNF7" FT /note="'G' in cDNA is 'A' in the human genome. The FT chimpanzee genome agrees with the human genomic sequence FT and not the cDNA." FT misc_difference 2370 FT /gene="C1QTNF7" FT /note="'G' in cDNA is 'A' in the human genome. The FT chimpanzee genome agrees with the human genomic sequence FT and not the cDNA." FT misc_difference 2686 FT /gene="C1QTNF7" FT /note="'T' in cDNA is 'C' in the human genome." FT misc_difference 3943..3954 FT /gene="C1QTNF7" FT /note="polyA tail: 12 bases do not align to the human FT genome." XX SQ Sequence 3954 BP; 1241 A; 757 C; 871 G; 1085 T; 0 other; gtactacagc atgagctcca agcttcaaac gcattctcat gctcagacga gcactttatt 60 tttcatcaag ttattttttg cattgttttg gagtagcttc gaataataaa cacatatttc 120 tgctttaaat ttttaatagt taactacatt catgggacaa ccaaagcaag aaagcctcat 180 gttttggggg aaagtttgat atcagcaatg tccagacaag agccaaagat gtttgtcttg 240 ctctatgtta caagttttgc catttgtgcc agtggacaac cccggggtaa tcagttgaaa 300 ggagagaact actcccccag gtatatctgc agcattcctg gcttgcctgg acctccaggg 360 ccccctggag caaatggttc ccctgggccc catggtcgca tcggccttcc aggaagagat 420 ggtagagacg gcaggaaagg agagaaaggt gaaaagggaa ctgcaggttt gagaggtaag 480 actggaccgc taggtcttgc cggtgagaaa ggggaccaag gagagactgg gaagaaagga 540 cccataggac cagagggaga gaaaggagaa gtaggtccaa ttggtcctcc tggaccaaag 600 ggagacagag gagaacaagg ggacccgggg ctgcctggag tttgcagatg tggaagcatc 660 gtgctcaaat ccgccttttc tgttggcatc acaaccagct acccagaaga aagactacct 720 attatattta acaaggtcct cttcaacgag ggagagcact acaaccctgc cacagggaag 780 ttcatctgtg ctttcccagg gatctattac ttttcttatg atatcacatt ggctaataag 840 catctggcaa tcggactggt acacaatggg caataccgga taaagacctt cgacgccaac 900 acaggaaacc atgatgtggc ttcggggtcc acagtcatct atctgcagcc agaagatgaa 960 gtctggctgg agattttctt cacagaccag aatggcctct tctcagaccc aggttgggca 1020 gacagcttat tctccgggtt tctcttatac gttgacacag attacctaga ttccatatca 1080 gaagatgatg aattgtgatc aggaccaaga tccctgtggt aaacactctg attgaatctg 1140 gggttccaga aggtggaaca agcaggaatg ggatccaaag agactcccac tcagattcta 1200 aagcatttaa agacaattct agcagaattt atcaaaacaa gatgaaacac agaaaagttg 1260 aaaccacaac aaaatgaatt ctattaaaga atagccccag atataaattc tcttgaaagc 1320 aatgttcata aatatttaag caaattaaag acaatgttaa caaattttct attaaatgcc 1380 ctgagtgata aaaccagttg gcgataatat tgccttatta aatcttcaaa aaatatattt 1440 tagtctgtta tttaagaaaa acataacatc ccaaaatctt tgacaattct cgaaaggcta 1500 tatagtaagt caaaaaccaa aggtaagaga tgctaactat ttttcaagca agctacagag 1560 aaatgataaa tgttttttgt tttattattt attccttcat gtttgtatat attcactcaa 1620 caacccttta atgagcctgt aaggaccaga cactgtggcg ctgaatcaga tttaataatg 1680 agttaagaca aagcccctac ctatgggcta gtgtgtggtg atcaaactat cacaattcag 1740 tgtgatgagc agcatagcaa acagatggat ttgaagctaa aagcacacag ggtctgctat 1800 tcctgaggct gggggccaga gaagctttta cgcatggaaa aacactaatc atgccaaggt 1860 gtatgtgttt aagggggtgt gatggatgca aagggaatga ggaattcagc actgcattct 1920 ctttgcaccc tcaatgcatg attggtattc tcaacagcaa aggggtgaaa aatctagaga 1980 cagaggaggc ctggcagggg tgataaaaat ggagattgaa atgaagagaa atagccagca 2040 ggtgattctt ctgaatcctt tagtgtgatg gtttcccaag acaaacattt gtcctaatag 2100 ctttctcata aatatgggca ccactttaca ttgtggtaag acattgcttc tcatggatct 2160 gctaggtatt tatttcaaat aaagcaaggc atatgttcac tgatttacga gtaagctgat 2220 gagagcaatg aacaggagaa ggagggagag agccaaatgt ctgagtaaac agatatccct 2280 tccaagtctc acacctccct tagtcccact cttgcttgtg tcagcacctt gttcttcact 2340 gaactgcaat tcttcaatta ttctcttccg tgattttgtc tgatctacca tttctatggt 2400 ttatggtaat agtattccct ttatccctcc cttttggtaa cttccaatcc tccttctatg 2460 tattcctttc tctgctcatt gacttataaa tagttttcat acctcttatg tttgaatcac 2520 catgctagat tctgtgaaga cagaagagta tcaagattaa tatattaata gtatagctct 2580 gactggtaaa tttctttttt ttaatcttcc ccaatttaaa ttttttaatt taaaagtaaa 2640 ttttactgtc gaaaatgcaa acttggggag ggcggaaaca tcacatacaa ggtttccact 2700 tcacacttgg agggttgcat ggcggctggg caaaggtgct ccccacttcc cagatggtgc 2760 ggcggctggc cagaggcact cttcacttcc cagacagagg ggcggccggg cagaggtgct 2820 cctcacttcc cagagggtgc aggagccagc tctgactagt aaatttctaa ggataccaga 2880 aaggaaatgg catgcacaca cacaaaaaat acctaaattt tggatgagaa aatgataaaa 2940 tatgctaagt tctaggctgg aaataagggc aaaatgctgt gaaagaagag gaaatgttta 3000 cttccaaatt aggatgtgac agagaaggga tagggaaatc ctctctgctc attgggcctt 3060 acatgatggg tgacacttgg agtggcacaa gttgggggaa agcgcacttg agacagaggt 3120 aatgatgggg acgaagtgag aacagagacc cagaaggaga atcaatggac catatttgta 3180 agagctttga aagccagcct gagaattgga ggatttattc ataagaaagt gtagagaccc 3240 tgtgtatttc agagctggat actgccatta ccacagatga aagttgcaat gatctagcag 3300 ttgtgtgcaa aggcaaggct tgcttttcct gtctttcaac cctatcttgc ttttcctgtc 3360 tttcaaccct atcttgcttt cattgtcttc atcttcctgc catactttgt gcacttattg 3420 ctctccttct gagtcaggac atgtgtacag gagaccaaga acaatgagta ttagaaaaaa 3480 aggagacagc aaaggtggtt tgaggtagtc acctgcttac agataacagc caaagataga 3540 attccaagtt ataaagcata aaaaagagcc aacagaagta actaatccgg gaaaagtgaa 3600 catatgggcc ctttaaagac tacaagattt gctagataaa ctggaaatgg agaagttatt 3660 gcagacagtc atgaaccaca aatcactgtg attaaaattt tcttctgatc gtaatccacg 3720 aatgcattca ttttttggac attgcttact tatcttttaa atgtttcttt tattacaaag 3780 cctattttga gtagctttta aaactgaatt tcctttaatt ggtttgaagc ctagagatga 3840 atttcgtttt caaatatctg gtgggatggt aatggggatt agagaactga catgagaaaa 3900 gaggagctgt tttggtatta aacgaataaa atcttaagca aaaaaaaaaa aaaa 3954 // |
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