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EBI DbfetchID BC022180; SV 1; linear; mRNA; STD; MUS; 1671 BP. XX AC BC022180; XX DT 29-JAN-2002 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus beta-1,4-N-acetyl-galactosaminyl transferase 1, mRNA (cDNA DE clone IMAGE:4006866), complete cds. XX KW . XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1671 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1671 RG NIH MGC Project RA ; RT ; RL Submitted (25-JAN-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000155040. DR Ensembl-Gn; ENSMUSG00000006731; Mus_musculus. DR Ensembl-Tr; ENSMUST00000006914; Mus_musculus. DR ImaGenes; IMAGp998N199238Q. DR ImaGenes; IRAKp961E1418Q. DR ImaGenes; IRAVp968C0322D. DR ImaGenes; IRAVp968E066Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Institute for Systems Biology CC http://www.systemsbiology.org CC contact: amadan@systemsbiology.org CC Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha CC Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 18 Row: e Column: 14 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 42476102 CC This clone has the following problem: The cds is short compared to CC the longest cds in the locus. XX FH Key Location/Qualifiers FH FT source 1..1671 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="Czech II" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Lu30" FT /clone="IMAGE:4006866" FT /tissue_type="Mammary tumor metastatized to lung. FT MMTV-LTR/Wnt1 model. Expression driven by an MMTV-LTR FT enhancer." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1671 FT /gene="B4galnt1" FT /note="synonyms: GalNAcT, Gal-NAc-T, GalNAc-T" FT misc_difference 1..10 FT /gene="B4galnt1" FT /note="10 bases at the 5' end do not align to the mouse FT genome; Differences found between this sequence and the FT mouse C57BL/6J genome (build 35) are described in FT misc_difference features below" FT CDS 154..888 FT /codon_start=1 FT /gene="B4galnt1" FT /product="B4galnt1 protein" FT /db_xref="GOA:Q8VDF0" FT /db_xref="MGI:1342057" FT /db_xref="UniProtKB/TrEMBL:Q8VDF0" FT /protein_id="AAH22180.1" FT /translation="MRLDRRALYALVLLLACASLGLLYSSTRNAPSLPNPLALWSPPQG FT PPRLDLLDLAPEPRYAHIPVRIKEQVVGLLAQNNCSCESKGGSLPLPFLRQVRAVDLTK FT AFDAEELRAVSVAREQEYQAFLARSRSLADQLLIAPANSPLQYPLQGVEVQPLRSILVP FT GLSLQEASVQEIYQVNLSASLGTWDVAGEVTGVTLTGEGQPDLTLASPVLDKLNRQLQL FT VTYSSRSYQANTADTGGRPEEG" FT misc_difference 1181 FT /gene="B4galnt1" FT /note="1 base in cDNA is not found in the mouse genome; FT Differences found between this sequence and the mouse FT C57BL/6J genome (build 35) are described in misc_difference FT features below" FT misc_difference 1203 FT /gene="B4galnt1" FT /note="'G' in cDNA is 'A' in the mouse genome; Differences FT found between this sequence and the mouse C57BL/6J genome FT (build 35) are described in misc_difference features below" FT misc_difference 1335 FT /gene="B4galnt1" FT /note="'G' in cDNA is 'A' in the mouse genome; Differences FT found between this sequence and the mouse C57BL/6J genome FT (build 35) are described in misc_difference features below" FT misc_difference 1353 FT /gene="B4galnt1" FT /note="'T' in cDNA is 'C' in the mouse genome; Differences FT found between this sequence and the mouse C57BL/6J genome FT (build 35) are described in misc_difference features below" FT misc_difference 1389 FT /gene="B4galnt1" FT /note="'G' in cDNA is 'A' in the mouse genome; Differences FT found between this sequence and the mouse C57BL/6J genome FT (build 35) are described in misc_difference features below" FT misc_difference 1433 FT /gene="B4galnt1" FT /note="'C' in cDNA is 'T' in the mouse genome; Differences FT found between this sequence and the mouse C57BL/6J genome FT (build 35) are described in misc_difference features below" FT misc_difference 1509..1671 FT /gene="B4galnt1" FT /note="polyA tail: 163 bases do not align to the mouse FT genome; Differences found between this sequence and the FT mouse C57BL/6J genome (build 35) are described in FT misc_difference features below" XX SQ Sequence 1671 BP; 481 A; 448 C; 402 G; 340 T; 0 other; ccacgcgtcg cggatccccg acactgtcgg gctccctccc gcccagctcc cgcatcaggc 60 cgtcgccggc ctcatgagga ccccccggcc ggggcggaga accgggcact gcccggaccg 120 cgatcctgcc gcggccttag aacgttagac aggatgcggc tagaccgccg ggccctctat 180 gcgctagtct tgctgctcgc ctgcgcctcg ctgggtctcc tgtactccag cacccgaaac 240 gcgccaagtc tcccgaaccc tctggcattg tggtcgcccc cacaaggtcc cccgagactc 300 gatctgctag accttgcccc tgagcctcgc tacgcacaca tcccggtcag gatcaaggag 360 caagtggtgg ggctgctggc tcagaacaac tgcagttgtg aatccaaggg aggaagcctt 420 cccttgccct ttctgagaca ggttcgggcg gttgacctca ctaaagcctt tgacgctgag 480 gagctgaggg ctgtttctgt cgccagggag caggaatacc aggccttcct tgcaaggagc 540 cggtccctgg ctgaccagct gctgatagct cccgccaact cccccttaca gtaccccctg 600 cagggtgtgg aggttcagcc cctcaggagc atcctggtgc cagggctaag tctgcaggaa 660 gcttctgtcc aggagatata ccaggtgaac ctgagtgctt ctctaggcac ctgggacgtg 720 gcaggggaag taacaggagt gactctcacg ggagaggggc aaccggatct cacccttgcc 780 agcccagttc tggataaact caaccggcag ctgcaactgg tgacttacag cagccggagc 840 taccaggcca acacagcaga cacaggtggg aggcccgagg aggggtaggg acagactgag 900 agaacagaaa gaaccagaaa agcaaatgac cacgtgtggg aggccctcgg gcaatggcca 960 gaacagccta gacacacaat gaatgttgca agtgggccag cagggccagg agtcagagga 1020 gcctttgttt atctagggcc aaaacaggcc agggagaaac cagagctgga gagcattccc 1080 acttctgtct gtcatcacgg ctccaggaag tgacctgttc ctggctgttt ctagcccaac 1140 acttaccttg ccaagctccc tcacccttcc tccttttttt tctccaaaac tggcttttct 1200 gagcctgcgc ctaccttagg gcctttgcat ctgccgtttt caggaatgtt tttgcctaag 1260 tttgtttgtt tgctttcaag gttggctccc tcttgatgtt tacatctggg ctcagacgtc 1320 tcctgtttgc ttgagacaat gtcccttgcc tctgctttta cactagacgt ttcttattta 1380 ctcagcctga gctttgacgt tgtaaaatat ggacaattta cttttctgtg cccaagctta 1440 gtttcctgca atagtttatc tagtaagatt accatgaaga ttaaatggct tcatctattt 1500 agaacacaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1560 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1620 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a 1671 // |
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