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EBI DbfetchID BC020623; SV 1; linear; mRNA; STD; HUM; 1357 BP. XX AC BC020623; XX DT 09-JAN-2002 (Rel. 70, Created) DT 02-DEC-2006 (Rel. 90, Last updated, Version 12) XX DE Homo sapiens chromosome 8 open reading frame 4, mRNA (cDNA clone MGC:22238 DE IMAGE:4718061), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-1357 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1357 RG NIH MGC Project RA ; RT ; RL Submitted (03-JAN-2002) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR H-InvDB; HIT000038856. DR ImaGenes; IMAGp958O221568Q. DR ImaGenes; IRALp962E1637Q. DR ImaGenes; IRAUp969E0287D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: CLONTECH CC cDNA Library Preparation: CLONTECH Laboratories, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAL Plate: 37 Row: e Column: 16 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 21359931. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below CC and these differences were also compared to chimpanzee genome CC (build 1). XX FH Key Location/Qualifiers FH FT source 1..1357 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_77" FT /clone="MGC:22238 IMAGE:4718061" FT /tissue_type="Lung" FT /note="Vector: pDNR-LIB" FT /db_xref="taxon:9606" FT gene 1..1357 FT /gene="C8orf4" FT /note="synonyms: TC-1, hTC-1, TC1, MGC22806" FT CDS 52..372 FT /codon_start=1 FT /gene="C8orf4" FT /product="chromosome 8 open reading frame 4" FT /db_xref="GDB:11504792" FT /db_xref="GOA:Q9NR00" FT /db_xref="HGNC:1357" FT /db_xref="InterPro:IPR020282" FT /db_xref="UniProtKB/Swiss-Prot:Q9NR00" FT /protein_id="AAH20623.1" FT /translation="MKAKRSHQAIIMSTSLRVSPSIHGYHFDTASRKKAVGNIFENTDQ FT ESLERLFRNSGDKKAEERAKIIFAIDQDVEEKTRALMALKKRTKDKLFQFLKLRKYSIK FT VH" FT misc_difference 79 FT /gene="C8orf4" FT /note="'A' in cDNA is 'G' in the human genome; amino acid FT difference: 'I' in cDNA, 'V' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT misc_difference 782^783 FT /gene="C8orf4" FT /note="1 base in the human genome, T, is not found in cDNA. FT The chimpanzee genome agrees with the cDNA sequence, FT suggesting that this difference is unlikely to be due to an FT artifact." FT misc_difference 1329..1357 FT /gene="C8orf4" FT /note="polyA tail: 29 bases do not align to the human FT genome." XX SQ Sequence 1357 BP; 486 A; 238 C; 278 G; 355 T; 0 other; acagactctc tggaaagcct gggagctgaa ttccggaaga tccccacatc gatgaaagca 60 aagcgaagcc accaagccat catcatgtcc acgtcgctac gagtcagccc atccatccat 120 ggctaccact tcgacacagc ctctcgtaag aaagccgtgg gcaacatctt tgaaaacaca 180 gaccaagaat cactagaaag gctcttcaga aactctggag acaagaaagc agaggagaga 240 gccaagatca tttttgccat agatcaagat gtggaggaga aaacgcgtgc cctgatggcc 300 ttgaagaaga ggacaaaaga caagcttttc cagtttctga aactgcggaa atattccatc 360 aaagttcact gaagagaaga ggatggataa ggacgttatc caagaatgga cattcaaaga 420 ccaagtgagt ttgtgagatt ctaacagatg cagcattttg ctgctacctt acaagcttct 480 cttctgtcag gactccagag gctggaaagg gaccgggact ggaaagggac caggactgaa 540 cagactggtt acaaagactc caaacaattt catgccctgt gctgttacag aggagaacaa 600 aatgctttca gcaaggattt gaaaactctt ccgtccctgc aggaaaggat tgatgctgat 660 agaagagcct ggacagatgt aatgagaact aaagaaaaca gatggctgga gatgacattt 720 atccagggtc actttgtcag gccctaggac ttaaatcgaa gttgaacttt tttttttttt 780 ttaaccaaat agatagggga agggaggagg gagagggagg acagggagag aaaataccat 840 gcataaattg tttactgaat ttttatatct gagtgttcaa aatatttcca agcctgagta 900 ttgtctattg gtatagattt ttagaaatca ataattgatt atttatttgc acttattaca 960 atgcctgaaa aagtgcacca catggatgtt aagtagaaat tcaagaaagt aagatgtctt 1020 cagcaactca gtaaaacctt acgccacctt ttggtttgta aaaggttttt tatacatttc 1080 aaacaggttg cacaaaagtt aaaataatgg ggtcttttat aaatccaaag tactgtgaaa 1140 acattttaca tattttttaa atcttctgac taatgctaaa acgtaatcta attaaatttc 1200 atacagttac tgcagtaagc attaggaagt gaatatgata tacaaaatag tttataaaga 1260 ctctatagtt tctataattt attttactgg caaatgtcat gcaacaataa taaattattg 1320 taaactttaa aaaaaaaaaa aaaaaaaaaa aaaaaaa 1357 // |
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