EBI Dbfetch

ID   BC019406; SV 1; linear; mRNA; STD; MUS; 1642 BP.
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AC   BC019406;
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DT   04-JAN-2002 (Rel. 70, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 13)
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DE   Mus musculus butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1
DE   (gamma-butyrobetaine hydroxylase), mRNA (cDNA clone MGC:30364
DE   IMAGE:5134018), complete cds.
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KW   MGC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
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RN   [1]
RP   1-1642
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1642
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (19-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000153867.
DR   Ensembl-Gn; ENSMUSG00000041660; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000046233; Mus_musculus.
DR   ImaGenes; IMAGp998C1111329Q.
DR   ImaGenes; IRAKp961N0141Q.
DR   ImaGenes; IRAVp968H1138D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Jeffrey E. Green, M.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Baylor College of Medicine Human Genome
CC   Sequencing Center
CC   Center code: BCM-HGSC
CC   Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC   Contact: amg@bcm.tmc.edu
CC   Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC   Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC   A.N., Gibbs, R.A.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 41 Row: n Column: 1
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 18485501.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1642
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="FVB/N"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Li9"
FT                   /clone="MGC:30364 IMAGE:5134018"
FT                   /tissue_type="Liver, normal. 5 month old male mouse."
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   gene            1..1642
FT                   /gene="Bbox1"
FT   CDS             94..1257
FT                   /codon_start=1
FT                   /gene="Bbox1"
FT                   /product="butyrobetaine (gamma), 2-oxoglutarate dioxygenase
FT                   1 (gamma-butyrobetaine hydroxylase)"
FT                   /db_xref="GOA:Q924Y0"
FT                   /db_xref="InterPro:IPR003819"
FT                   /db_xref="MGI:1891372"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q924Y0"
FT                   /protein_id="AAH19406.1"
FT                   /translation="MHCAILKAEAVDGAHLMQIFWHDGAESLYPAVWLRDNCQCSDCYL
FT                   HSAKARKLLLEALDVNIRIDDLTFDRKKVYITWPNDHYSEFEANWLKKRCFSQQARARL
FT                   QGELFLPECQYWGSELQLPTLNFEDVLNDDDHAYKWLSSLKKVGIVRLTGAADKRGEII
FT                   KLGKRIGFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQ
FT                   TVTGGDSEIVDGFNVCQKLKEKNPQAFHILSSTFVDFTDIGVDYCDFSVQSKHKIIELD
FT                   DKGQVVRVNFNNATRDTVFDVPIERVQPFYAALKEFVDLMNSKEYKYTFKMNPGDVITF
FT                   DNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRILRQRVTNGN"
FT   misc_difference 1629..1642
FT                   /gene="Bbox1"
FT                   /note="polyA tail: 14 bases do not align to the mouse
FT                   genome."
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SQ   Sequence 1642 BP; 492 A; 354 C; 346 G; 450 T; 0 other;
     atcaggttca ggtacaatct gccagcctac tataattaac actgatttgt cctagcaggt        60
     ggctgatagg atttatcacc aaagaccaga aacatgcact gtgccatcct aaaggcagaa       120
     gcagtggatg gggctcattt gatgcagatc ttttggcacg atggggcaga gtccctctac       180
     ccagcagtat ggctgagaga caactgtcag tgttcagact gctacctaca ttctgcaaaa       240
     gctcggaaac ttctcctgga agctcttgat gtaaacatta gaatcgatga tttgacattt       300
     gaccggaaaa aggtttatat cacatggccc aatgaccatt acagtgaatt cgaagctaac       360
     tggctgaaga aaagatgctt ttctcaacag gccagagcaa ggctccaagg agaattgttt       420
     ttaccagaat gtcagtactg gggctcagaa ctccagctgc caactctgaa ttttgaagat       480
     gtgttaaatg atgatgacca tgcatacaaa tggctttcca gtctcaagaa agtaggcatt       540
     gtgagactca ccggagcagc tgacaaacgt ggtgagatca taaaacttgg gaaaagaatt       600
     ggcttcctgt acctcacatt ttatggacac acttggcaag tgcaggacaa gattgatgcc       660
     aacaatgtgg cttatacaac tgggaagctc agcttccaca ctgactaccc agccctccac       720
     catccacctg gggttcagct tctgcattgt atcaagcaaa cagtcacagg aggtgactct       780
     gaaattgtgg atgggtttaa cgtgtgccaa aagctcaagg agaagaaccc tcaggctttc       840
     catattctct cctcgacctt tgtggatttt acagacattg gagtggatta ctgtgatttc       900
     tctgtgcaat ctaaacacaa gattatagag ttggatgata aaggccaagt ggttcgcgtc       960
     aacttcaaca atgcaaccag agatacagtc tttgatgtcc ccatcgaaag agttcagcct      1020
     ttctacgctg ctctgaaaga gtttgttgac ctcatgaaca gcaaagaata caagtatacc      1080
     ttcaagatga atccaggtga tgtgattacc ttcgacaact ggcgcttgct tcatggacgt      1140
     cgtagctatg aggcgggaac tgagatatcc cgccatctgg aaggagcgta tgctgactgg      1200
     gatgtagtga tgtcaaggct tcgtattctg agacagagag tcacgaatgg gaactgaatc      1260
     tcctggcctt agactttagt gcaagtccag tgactgaatg ctcctatcta taacctggtt      1320
     attctcatat catgatcaac atcattcaca taataatttc tttaaaactg aacatgcagc      1380
     ttctctcatc agggtattct tccctgcaat catattcaat atctcttatt tagtgtcatg      1440
     gtaagggtta gtctcaaagc atcccttctg tgggataagc tctctgactt tgcattagca      1500
     agtattacca aaccaccccc cctacaaata gttttatatc taacaaatct ttctggcaaa      1560
     taaaactgtt ttataaatga ttaaagcttg tgtttcaaat aaaagatctt aaaatatgtt      1620
     cctgctcaaa aaaaaaaaaa aa                                               1642
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