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EBI DbfetchID BC018333; SV 1; linear; mRNA; STD; MUS; 2291 BP. XX AC BC018333; XX DT 10-DEC-2001 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 14) XX DE Mus musculus aldo-keto reductase family 1, member D1, mRNA (cDNA clone DE MGC:25814 IMAGE:4162788), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2291 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2291 RG NIH MGC Project RA ; RT ; RL Submitted (03-DEC-2001) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSMUSG00000038641; Mus_musculus. DR Ensembl-Tr; ENSMUST00000040987; Mus_musculus. DR ImaGenes; IMAGp998O139445Q. DR ImaGenes; IRAKp961M0330Q. DR ImaGenes; IRAVp968A0648D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 30 Row: m Column: 3 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 21703733. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2291 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Li9" FT /clone="MGC:25814 IMAGE:4162788" FT /tissue_type="Liver, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2291 FT /gene="Akr1d1" FT /note="synonym: MGC25814" FT CDS 73..1050 FT /codon_start=1 FT /gene="Akr1d1" FT /product="aldo-keto reductase family 1, member D1" FT /db_xref="GOA:Q8VCX1" FT /db_xref="HSSP:1J96" FT /db_xref="InterPro:IPR020471" FT /db_xref="MGI:2384785" FT /db_xref="UniProtKB/Swiss-Prot:Q8VCX1" FT /protein_id="AAH18333.1" FT /translation="MNLSAAHHQISLSDGNNIPLIGLGTYSDPRPVPGKTYVAVKTAID FT EGYRHIDGAYVYHNEHEVGEAIREKIAEGKVKREEIFYCGKLWNTEHVPSMVLPALERT FT LKALKLDYIDLYIIELPMAFKPGKEIYPRDENGRIIYDKTNLCATWEALEACKDAGLVK FT SLGVSNFNRRQLELILNKPGLKYKPVTNQVECHPYFTQTKLLKFCQQHDIVIVAHSPLG FT TCRNPSWVNVSSPPLLNDELLTSLGKKYNKTQAQIVLRFNIQRGIVVIPKSFTPERIKE FT NFQIFDFSLTEEEMKDIDALNKNVRYVELLMWSDHPEYPFHDEY" FT misc_difference 324 FT /gene="Akr1d1" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 768 FT /gene="Akr1d1" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 813 FT /gene="Akr1d1" FT /note="'A' in cDNA is 'G' in the mouse genome; no amino FT acid change." FT misc_difference 1084^1085 FT /gene="Akr1d1" FT /note="1 base in the mouse genome, T, is not found in FT cDNA." FT misc_difference 1433 FT /gene="Akr1d1" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 1463 FT /gene="Akr1d1" FT /note="'T' in cDNA is 'A' in the mouse genome." FT misc_difference 1567 FT /gene="Akr1d1" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 1588 FT /gene="Akr1d1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 1753 FT /gene="Akr1d1" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 2279..2291 FT /gene="Akr1d1" FT /note="polyA tail: 13 bases do not align to the mouse FT genome." XX SQ Sequence 2291 BP; 670 A; 484 C; 506 G; 631 T; 0 other; taggcacctt ttcaaataat gtgcctctgc cctgttcaga atcaccccag aagcttcaga 60 ttcttctcta cgatgaacct cagcgctgca caccaccaaa tatccctaag tgatgggaac 120 aacattccac tcattgggct tggaacctac tcagatccta gaccggtccc tgggaagacc 180 tatgtggcag tgaagacagc tattgatgag gggtaccggc acattgatgg cgcctatgtt 240 taccacaatg agcatgaagt cggtgaggcc atcagagaaa agatagcaga agggaaggta 300 aagagggaag agatcttcta ctgcggaaag ttatggaata cagagcatgt cccatcaatg 360 gtcctcccag ccctggaaag gacgctaaag gccctcaaac tagattacat agacctttat 420 attatcgaac tgcccatggc ctttaagcct ggaaaggaaa tttaccctag agatgaaaat 480 ggccgaatta tatatgacaa aacaaatctg tgtgccacgt gggaggcatt ggaagcttgc 540 aaagatgctg gcttggtgaa atcccttggg gtgtctaatt ttaaccgcag gcagctggag 600 ctcatcttga acaagccagg actcaagtac aaaccagtca ctaaccaggt ggagtgccac 660 ccgtatttca cccagacaaa actcttgaaa ttctgccagc agcatgacat cgtcattgtc 720 gcacatagcc ccttagggac ctgccgcaac ccatcatggg tgaacgtttc ttctccaccc 780 ttgttaaatg acgaactcct aacctcactg ggaaaaaagt acaataagac acaagctcaa 840 attgtgttgc gtttcaacat ccagcgaggg atagttgtca ttcctaaaag ctttaccccc 900 gaaaggatca aagaaaactt tcagatcttt gacttttctc tcacggaaga agaaatgaag 960 gacattgatg ccttgaataa aaatgtccgc tatgtggagt tgctcatgtg gagtgaccat 1020 cctgaatacc catttcatga cgaatactga acatggaaat ttcttcaaca gagttttttt 1080 ttttcttcat tcaagatctt aagctgatta atccactcca gatgtagata aatggggtct 1140 tgctctcttc agattaagat gggcagaaca caccatgctt aacttttgtg tagtattaac 1200 tcagctagct ctgatgaaga gaaaagaaga ttcatcttta tttaatctat ctggatagtt 1260 ctttgcaaat gtcttactaa tatctttaga tcaatgtctt ctagactgtt catggaaatc 1320 actaaacttt actcaaaagt agcatgtaaa agcaggtcca agaatctgag actaatatag 1380 ggagtctgat ttgtttaacc tttagcagga caaagaggtt tgcagttggc acggttcctg 1440 gtgctgacca tgaccatgac cttccaaatg tttggaccat tagttgcaag atggtcacag 1500 ccaaggcaga aatccacatg ccattcctaa tgcaccttga gtagagatag aactggaagt 1560 cttgaaaagt cctaaagaag aacatactgt aggatgttcc agggctagag gttcctgcag 1620 tgcttgcctg gcaggctgga ggcccagggt gagggaggtg gggatgaggg caatcggcaa 1680 agccatgctg agtctgtttt tatcatttgt ttccatccag tgtgcccatt cagcctttca 1740 tgtgcgtgaa gggtggacaa cactgattct ttcttaaatt gtttttgttt aggagggtgg 1800 ggagttgaga cagggtcttg tgtagtccag actgctcaca aacctgctgt gcagttgagg 1860 ccagtcttga attctgaatc cctggtcttt ctcccatttt taatgccctg agctttcatg 1920 tgactggtaa gccctacttg tactatgtta taatcattct tgcctgcact catcaagaaa 1980 accaccatgt aaagtggcaa gaaacaagat atacaaatca agctttgtac cataaaatcg 2040 tctgaagatg gtgatttttt ttttaaaaaa ttattttatg tatatgagtg cactgtagct 2100 gtcttcagaa acaccagaag agggcatcag atctcactac agatggttgt gagctaccac 2160 gtggttgctg ggatttgaac tcaggaagtt tggaagagca gcctgtgctc ttaaccgctg 2220 agcatctttc cagcccccaa atgatttttt tttctttttt aaagaaggat ttgagaaaaa 2280 aaaaaaaaaa a 2291 // |
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