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EBI DbfetchID BC018194; SV 1; linear; mRNA; HTC; MUS; 2226 BP. XX AC BC018194; XX DT 10-DEC-2001 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 15) XX DE Mus musculus cDNA clone IMAGE:3981507, containing frame-shift errors. XX KW HTC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2226 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2226 RG NIH MGC Project RA ; RT ; RL Submitted (03-DEC-2001) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000162332. DR Ensembl-Gn; ENSMUSG00000020260; Mus_musculus. DR Ensembl-Tr; ENSMUST00000051914; Mus_musculus. DR GOA; Q8VHI3. DR ImaGenes; IMAGp998N049178Q. DR ImaGenes; IRAKp961F0930Q. DR ImaGenes; IRAVp968E1147D. DR InterPro; IPR019378; GDP-Fuc_prot_O-FucTrfase. DR MGI; 1916863; Pofut2. DR UniProtKB/Swiss-Prot; Q8VHI3; OFUT2_MOUSE. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 30 Row: f Column: 9 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 19525730 CC This clone has the following problem: frame shifted. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2226 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam1" FT /clone="IMAGE:3981507" FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha FT model. 10 month old virgin mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT misc_difference 5 FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 12 FT /note="'G' in cDNA is 'C' in the mouse genome." FT misc_difference 12^13 FT /note="1 base in the mouse genome, C, is not found in FT cDNA." FT misc_difference 1165 FT /note="1 base in cDNA is not found in the mouse genome." FT misc_difference 2208..2226 FT /note="polyA tail: 19 bases do not align to the mouse FT genome." XX SQ Sequence 2226 BP; 509 A; 640 C; 628 G; 449 T; 0 other; cggacgcgtg gggccggggc catggcggcg ctcagcgtcg tctgcctgct gctggcagcg 60 gcatcctggc ggccggtctc ggcttcagga gaagaattct ggcctggcca gtcggcggcg 120 gacatcctgt cgggggcggc atcccgcaga cggtacctcc tgtatgatgt caacccccca 180 gaaggcttca atctccgcag ggatgtctat atccgggtgg catccttgct gaagacgctg 240 ttgaagactg aagagtgggt gctagtcctg cccccgtggg gccgcctcta ccactggcaa 300 agccctgaca tccaccaggt ccggattccc tggtccgagt tttttgacct cccgagtctc 360 aataaaaaca tccccgttat agagtatgag cagttcattg cagagtccgg cgggcccttt 420 atcgaccagg tgtacgtcct acaaggttac gccgagggct ggaaggaggg cacctgggag 480 gagaaggtgg acgcacggcc ctgtattgac cctctgctgt actcgcagga caagcatgag 540 tattacagag gctggttttg gggctacgaa gaaacacggg gtctgaatgt ctcctgcctg 600 tccgtccagg ggtcggcttc catcgtcgcg cctgtcctct taaaaaacac atctgctcgg 660 tctgtgatgc tggaccgagc tgagaatctg cttcatgacc actatggagg ccgggagtac 720 tgggataccc ggcgcagcat ggtgtttgca aagcacttgc gggctgtggg agacgagttt 780 aggagccagc acctcaactc gacggatgcc gctgataaga tggccccgga ggaagactgg 840 acgaagatga aggtcaaact gggctcagca ctaggcggcc cctacctcgg agtccacctg 900 agaaggaagg acttcatctg gggccacagg gaggatgtgc ccagcctgga gggcgccgtg 960 aagaagatcc gcagcctcat gaagactcat cagctggaca aggtgttcgt ggccacagac 1020 gccatcagga aggagcagga agaattgagg aagctgctgc cggaaatggt gaggtttgag 1080 cccacgtggg aggagctgga gctgtacaag gacggaggcg tcgccatcat cgatcagtgg 1140 atctgcgctc atgccaggtt tttttattgg cacctctgtt tccacatttt cctttcggat 1200 tcatgaagag agagagatcc tggggttgga ccccaagaca acatacaacc ggttttgtgg 1260 agaccaggag aaagcatgtg agcagcccac acactggaag attgcgtact gagggccacc 1320 tatccaccgc ctgccaatca ctcggtcaca gggtcccaga ggaggccccc acatgggagg 1380 caacacatct agagcccatg ctcccacgtg tccgtgggcc gacatctacc tgtgtctagg 1440 ctctgccacc ttcaggattc acaactgtgt cttctctcag gacctgagaa cccacgtccc 1500 catcacagat gtcacatgtg tgctagtcca gaaatagaag aacatttgtc agctccgaca 1560 caggcctctc agccaccttc ctgaacaagt tgagcatggc cagcctgtgg caatgccctc 1620 aggtgtggat gcgggctcct gaggtgttgg ggtgactgac gactgaggtc acttcacaca 1680 tggccagcgt gagccgacac caagccttgc ctcagcctcc acctgtgggg ctcccactaa 1740 tttcctcctg gatggaacga ctcgggcact gttgtcatca gagtgacagc cctggagcct 1800 tgccagtgac ttcctcgcct cacatggacc cccaggttca ctgcacacgc tgagaaatag 1860 aattgagaag taaaggaaat ggccttcaaa aggccacacc tgagacccgc ccctgcttta 1920 tgacaccctt ccctgggcct catgctgtac cacaggaggc agagtcagca cagccgtggc 1980 cagggcaccc ccaggtccct gacctggtac ttagcagtgc acccctcccc ccagtgctgt 2040 gcactgagca gcccccactc agctactgcc aggtctccgt cccaagcacc aaggtagact 2100 ctgagcacag acagggcccc gtggcccagt cagctgacca gctagaatca catatttatt 2160 ttccatttgt acatccaagc gtattaataa aatacttttt caagaaaaaa aaaaaaaaaa 2220 aaaaaa 2226 // |
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