EBI Dbfetch

ID   BC016208; SV 1; linear; mRNA; STD; MUS; 2522 BP.
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AC   BC016208;
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DT   13-NOV-2001 (Rel. 69, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 12)
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DE   Mus musculus histone deacetylase 11, mRNA (cDNA clone MGC:27683
DE   IMAGE:4913322), complete cds.
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KW   MGC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-2522
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2522
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (29-OCT-2001) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000180280.
DR   Ensembl-Gn; ENSMUSG00000034245; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000041736; Mus_musculus.
DR   ImaGenes; IMAGp998G1910818Q.
DR   ImaGenes; IRAKp961N0938Q.
DR   ImaGenes; IRAVp968C0737D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Jeffrey E. Green, M.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 38 Row: n Column: 9
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 21450316.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2522
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="FVB/N"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_SG2"
FT                   /clone="MGC:27683 IMAGE:4913322"
FT                   /tissue_type="Salivary gland, 10 week old female mouse"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   gene            1..2522
FT                   /gene="Hdac11"
FT                   /note="synonym: MGC27683"
FT   CDS             32..1075
FT                   /codon_start=1
FT                   /gene="Hdac11"
FT                   /product="histone deacetylase 11"
FT                   /db_xref="GOA:Q91WA3"
FT                   /db_xref="InterPro:IPR000286"
FT                   /db_xref="MGI:2385252"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q91WA3"
FT                   /protein_id="AAH16208.1"
FT                   /translation="MPHATQLYQHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKV
FT                   INFLKEEKLLSDGMLVEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNF
FT                   LVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIK
FT                   FLFERVEGISRATIIDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRK
FT                   VELEWGTEDEEYLEKVERNVRRSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKR
FT                   DEVVFRVVRAHDIPILMVTSGGYQKRTARIIADSILNLHDLGLIGPEFPCVSAQNSGIP
FT                   LLSCAVP"
FT   misc_difference 40
FT                   /gene="Hdac11"
FT                   /note="'T' in cDNA is 'C' in the mouse genome; no amino
FT                   acid change."
FT   misc_difference 2495..2522
FT                   /gene="Hdac11"
FT                   /note="polyA tail: 28 bases do not align to the mouse
FT                   genome."
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SQ   Sequence 2522 BP; 567 A; 673 C; 743 G; 539 T; 0 other;
     ggcgtccaga gcaggcaggg ccggctgcgg gatgcctcat gcaacacagc tgtaccagca        60
     tgtaccagag aaacgctggc ccatcgtgta ctcaccacgt tacaacatca ccttcatggg       120
     cctggagaag ctgcacccct ttgatgctgg gaaatggggc aaggtgatca acttcctgaa       180
     agaagagaag ctgctgtccg atggcatgct ggtggaggct cgggaggcct cggaggagga       240
     cctgctggtg gtgcacacga ggcgctatct caacgagctg aagtggtcct ttgtggtggc       300
     taccatcact gagatccccc cggtcatctt tcttcccaac ttccttgtgc agaggaaggt       360
     gctgaggccc ctgcggaccc agactggagg caccatcatg gcagggaagc tggctgtgga       420
     gcgaggctgg gccatcaatg ttggtggtgg cttccaccac tgctccagtg accgtggtgg       480
     gggcttctgt gcctatgcag acatcacact ggctatcaag ttcctgtttg aacgcgtgga       540
     aggcatctcc agagccacca tcattgatct cgatgcccac cagggcaatg ggcatgagcg       600
     agacttcatg ggtgacaagc gagtatacat catggatgtt tacaaccgcc acatctaccc       660
     tggggatcgc tttgctaaag aggccatcag gcggaaggtg gaattggagt ggggcacaga       720
     agatgaggaa tatctggaga aggtggagag gaatgtcagg aggtccctcc aggagcacct       780
     gcctgacgtg gtggtgtaca acgctggcac ggacgtgctg gagggagacc gcctcggggg       840
     gctgtccatc agcccagcgg gcattgtgaa gagggatgaa gtggttttcc gcgtggtccg       900
     agcccatgat atacccatcc tcatggtgac ctcgggtggg taccagaagc gcacagcccg       960
     tattatcgcc gactccatcc tcaacttgca tgacctgggg ctcattgggc ctgagtttcc      1020
     ctgcgtctcg gcacagaact cgggcatccc cctgctttcc tgtgctgtgc cttgacggct      1080
     actcacagaa cattgtcata cctgcccccc caccccatcc acccgcccac ccgcctgtgt      1140
     ttgttgctgt gaagacagct gccagtgagt gtggaggggc aggaagagca ggagccagcc      1200
     ttgctggcca ctcctccact ccccaccagg tgcccaaggg tctctgggcc tttggggtgg      1260
     aagagctgag tcccagggag gagcccatgt gggaagcagg caggccatca agagtcaggg      1320
     aggacagctt agctccagcc acagggaggg gcctctggag tagagtcgtt tgctgttcat      1380
     atcagcagaa gaagggccct ccccgacctg gttggcttac ttcctcactt tagtctggag      1440
     aggtcccctc ctggacgttg gtgcctgtgg gtctgaggag tttccatagc cagcctccag      1500
     ggggcactgg gttctcagct aacaggtagt agtcctggta tggattggga ggcctaagga      1560
     agaaggaagc tgggattctc cagtttgggt tcccctcaat aagtcaaggt ccagacagac      1620
     ctgtttttcc aagctccccc tatgatgatg gggttgaaca ctgaggatgc ccaaggcccc      1680
     caacttatct cctctgttca gcatgaaaac acgtttggga tgagtgttta gctcaggagt      1740
     gaccctccaa actggagttt ttaaggggct gctgaccagg atggagagaa ggcaaggccc      1800
     tgcagataga aatgagatgg aggctggtgg ccaagctagt cctaggtggg gcttgctaga      1860
     gggagggcag cgaaggtaac atctaggtac agtggcccca cagaccttga gtgagctaca      1920
     atctccattg ggctcaccca aagtgcccaa ttttcatctt tgtctgtggc cccaaggtct      1980
     acctgccctc tggccatttg accctgaagg gacagccagg gccctccgtg acgtaggcag      2040
     gaaagcagcc acccctagcc agagattggc agcataacca agggcacagg ggtaagagga      2100
     tgtgggccag ctgggtttcc tcctgccctg gatctgctcc aactacagga ctcatattca      2160
     ttaccatgtg ggggtattcc cacagccttc atagtgtcct tcatactccc tctgctggag      2220
     tcgggaggat gccagagtca ccagttgtct aaaccactga cctggaccag accccacagt      2280
     actaatagtg cagcaccaca cccctctgtc atggcctctt tgcctctgac tggaggtacc      2340
     tcccaggaca ttggggagtg gtgacagcac agtttgtcat tgtggagttt gtctgagtgc      2400
     cattcaggct ccaggttgtt gctgtgtgtt ctgaggtaga cagacctgcc tcctgaggac      2460
     cactggaaat aaagattcaa aattcaccaa tccaaaaaaa aaaaaaaaaa aaaaaaaaaa      2520
     aa                                                                     2522
//