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EBI DbfetchID BC016191; SV 1; linear; mRNA; STD; MUS; 964 BP. XX AC BC016191; XX DT 13-NOV-2001 (Rel. 69, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 9) XX DE Mus musculus RIKEN cDNA 0610038D11 gene, mRNA (cDNA clone MGC:27564 DE IMAGE:4483787), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-964 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-964 RG NIH MGC Project RA ; RT ; RL Submitted (29-OCT-2001) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSMUSG00000038812; Mus_musculus. DR Ensembl-Tr; ENSMUST00000088257; Mus_musculus. DR Ensembl-Tr; ENSMUST00000116551; Mus_musculus. DR ImaGenes; IMAGp998N1210322Q. DR ImaGenes; IOM19777. DR ImaGenes; IRAKp961B0438Q. DR ImaGenes; IRAVp968E0335D. DR ImaGenes; IRAVp968J059Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, CC Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, CC Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, CC Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, CC Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie CC Schein, Asim Siddiqui, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 38 Row: b Column: 4 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 13385801. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 33) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..964 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam1" FT /clone="MGC:27564 IMAGE:4483787" FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha FT model. 10 month old virgin mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..964 FT /gene="0610038D11Rik" FT CDS 410..784 FT /codon_start=1 FT /gene="0610038D11Rik" FT /product="0610038D11Rik protein" FT /db_xref="InterPro:IPR005651" FT /db_xref="MGI:1914924" FT /db_xref="UniProtKB/Swiss-Prot:Q9DCG9" FT /protein_id="AAH16191.1" FT /translation="MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARM FT IPKVEWAALVQAADTLNLAEVPKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPESG FT RLFPISRGIPNMLLNDETET" FT misc_difference 772^773 FT /gene="0610038D11Rik" FT /note="3 bases in the mouse genome, GAG, are not found in FT cDNA." FT misc_difference 954..964 FT /gene="0610038D11Rik" FT /note="polyA tail: 11 bases do not align to the mouse FT genome." XX SQ Sequence 964 BP; 218 A; 273 C; 253 G; 220 T; 0 other; ctcgcacacc ttcttcaatc gcagaaagag gtgcctggtt taccgacgtg acagttcgtg 60 acccatagcc gcaaacagag gtcggggatg atctggctga gcctcaaatg tgttcgtttt 120 acctgcgccg taacgcagcc ggtttacacg tgacttgcat agtgtgtact ctcttcagcg 180 agcgggattc ggcgtaagcc tttgcagtct ccccgagaaa cgcttccggt accaggacgt 240 gacccaacac agtccttccg atctcggctg ccgccaagcc ccccaaaagg tcccctaagt 300 cggccacttc cggtccggcg aagagttcaa cggcttcaaa gcggaagtgg tagaaaggag 360 aagtgtggac tccttccggt tccggcctca cgcgctccgc tgtgacaaca tgaaactgct 420 cacccacaat ctcctaagct cccatgtgcg gggcgtgggc acgcgtggct tcccgctgcg 480 cctgcaggcc actgaggtcc gcatcaaccc cgtggagttc aacccggagt tcgtggcgcg 540 gatgatcccc aaagtggagt gggcggcgct tgtgcaggca gcggacacct taaacttggc 600 cgaggtaccc aaagagccga ctgaaggcta tgagcacgac gagacatttt tgaggaagat 660 gcaccacgtg ttgcttgagg ttgatgtact ggagggcacc ctgcaatgcc cagaatctgg 720 tcgtcttttc cccatcagcc gcgggatccc caatatgctg ttgaatgatg agactgagac 780 gtaaccttgc tagccgccac tttggtattt tgttgactgt gtgtttctgt tgtacggtct 840 gttaaataga cgtgtcatgt gtgaccccca aactcccccc agtgactcac cgaccaccgt 900 gtacttgagc tccatagtat attttttttc tcattaaagg ttcaaaacca aaaaaaaaaa 960 aaaa 964 // |
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