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EBI DbfetchID BC013526; SV 1; linear; mRNA; STD; MUS; 1324 BP. XX AC BC013526; XX DT 10-SEP-2001 (Rel. 69, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 11) XX DE Mus musculus glutathione peroxidase 6, mRNA (cDNA clone MGC:19204 DE IMAGE:4237630), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1324 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1324 RG NIH MGC Project RA ; RT ; RL Submitted (04-SEP-2001) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSMUSG00000004341; Mus_musculus. DR Ensembl-Tr; ENSMUST00000004453; Mus_musculus. DR ImaGenes; IMAGp998M239847Q. DR ImaGenes; IRAKp961E1625Q. DR ImaGenes; IRAVp968D0529D. DR ImaGenes; IRAVp968G098Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 25 Row: e Column: 16 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 21728387. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1324 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Kid14" FT /clone="MGC:19204 IMAGE:4237630" FT /tissue_type="Kidney, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1324 FT /gene="Gpx6" FT /note="synonyms: MGC19204, Ry2d1, RP23-54E4.7" FT misc_difference 1..24 FT /gene="Gpx6" FT /note="24 bases at the 5' end do not align to the mouse FT genome." FT CDS 33..698 FT /codon_start=1 FT /gene="Gpx6" FT /product="glutathione peroxidase 6" FT /db_xref="GOA:Q91WR8" FT /db_xref="InterPro:IPR000889" FT /db_xref="InterPro:IPR012335" FT /db_xref="InterPro:IPR012336" FT /db_xref="MGI:1922762" FT /db_xref="UniProtKB/Swiss-Prot:Q91WR8" FT /protein_id="AAH13526.1" FT /translation="MAQKLWGSCLFSLFMAALAQETLNPQKSKVDCNKGVTGTVYEYGA FT NTIDGGGFVNFQQYAGKHILFVNVASFCGLTATYPELNTLQEELKPFNVTVLGFPCNQF FT GKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELF FT GSPEHLFWDPMKIHDIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYLNQTSTQ" FT misc_difference 187 FT /gene="Gpx6" FT /note="'G' in cDNA is 'A' in the mouse genome; amino acid FT difference: 'G' in cDNA, 'E' in the mouse genome." FT misc_difference 276 FT /gene="Gpx6" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 285 FT /gene="Gpx6" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 332 FT /gene="Gpx6" FT /note="'G' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 344 FT /gene="Gpx6" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 558 FT /gene="Gpx6" FT /note="'A' in cDNA is 'G' in the mouse genome; amino acid FT difference: 'I' in cDNA, 'V' in the mouse genome." FT misc_difference 715 FT /gene="Gpx6" FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 1030 FT /gene="Gpx6" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 1036 FT /gene="Gpx6" FT /note="'T' in cDNA is 'A' in the mouse genome." FT misc_difference 1236..1324 FT /gene="Gpx6" FT /note="polyA tail: 89 bases do not align to the mouse FT genome." XX SQ Sequence 1324 BP; 393 A; 328 C; 272 G; 331 T; 0 other; cccacgcgtc cgcccacgcg tccggtacaa ccatggccca gaagttgtgg ggttcctgtc 60 ttttctcatt gtttatggct gccttagctc aggagactct gaatcctcaa aaatcgaagg 120 tggattgcaa caaaggggtg actggcaccg tctatgagta tggagccaac accatagatg 180 gtggggggtt tgtcaacttc cagcagtatg caggaaagca catcctcttt gtcaacgtgg 240 catccttctg tggcctgaca gctacgtacc ctgagttgaa cacactgcag gaggagctga 300 agccattcaa cgtcacggtt ttgggctttc cgtgcaacca gttcggaaag caagaacctg 360 gaaagaactc agagattctc cttggactca agtatgtgcg tccaggcggt ggctatgtcc 420 ccaatttcca gctctttgag aagggggatg tgaacggaga caatgaacaa aaggtttttt 480 ctttcctaaa gaactcctgc cctcccacct ctgaactttt tggctctcca gaacatctct 540 tctgggatcc catgaagatt catgatatcc gctggaactt tgagaagttc ctggtgggac 600 ctgatggagt ccctgtcatg cgctggttcc accatactcc tgtcagaatt gtccagtcag 660 acatcatgga gtacctaaac caaaccagta cccagtaaga aaggctttac aaatcttgtc 720 tttgttccac tcggtcacca gcctccatat gaccaaagcc cacagcactt cctgtgtccc 780 tactaatgca tgtgcaatct acagagatcc taatctatca ttcaaagcac tggccggtta 840 aaagaagtgg ggatgggtgg ccagatcctc tgggtcccag cctcttctcc tccaaagctg 900 ggcatgcttt gtcaagttct ccttctgttt agccctttgg taccacagca ccctgtagtt 960 ttcttaggga attttgaagg ctgagagcag aaacctctca tcacatgaag acagggcatt 1020 tccaccaggg tcccatggtc cctctggctc atatcctacc agccttcctg agtgacttcc 1080 tgtttgtgca ttcaggtcat ggcacttggc tacagatgtc cttcacacca aatgatgtgg 1140 tttgctctca cccagagttc tcccaccttt aaattcattc ctatgatcac tgtctctaat 1200 aatagtaata atctaataaa caataaaaga actcaaaaaa aaaaaaaaaa aaaaaaaaaa 1260 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1320 aaaa 1324 // |
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