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EBI DbfetchID BC011281; SV 1; linear; mRNA; HTC; MUS; 1677 BP. XX AC BC011281; XX DT 31-JUL-2001 (Rel. 68, Created) DT 31-OCT-2008 (Rel. 97, Last updated, Version 18) XX DE Mus musculus asparagine-linked glycosylation 1 homolog (yeast, DE beta-1,4-mannosyltransferase), mRNA (cDNA clone IMAGE:3980821). XX KW HTC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1677 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1677 RG NIH MGC Project RA ; RT ; RL Submitted (25-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSMUSG00000039427; Mus_musculus. DR Ensembl-Tr; ENSMUST00000100196; Mus_musculus. DR ImaGenes; IMAGp998A149177Q. DR ImaGenes; IRAKp961K0823Q. DR ImaGenes; IRAVp968E0325D. DR ImaGenes; IRAVp968I057Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 23 Row: k Column: 8 CC This clone has the following problem: frame shifted. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 37) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1677 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam1" FT /clone="IMAGE:3980821" FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha FT model. 10 month old virgin mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT misc_difference 2 FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 44 FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 116 FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 951..952 FT /note="in the mouse genome : CA." FT misc_difference 957 FT /note="'A' in cDNA is 'G' in the mouse genome; amino acid FT difference: 'I' in cDNA, 'V' in the mouse genome." FT misc_difference 1034 FT /note="'G' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 1136 FT /note="'T' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 1269 FT /note="'A' in cDNA is 'G' in the mouse genome; amino acid FT difference: 'R' in cDNA, 'G' in the mouse genome." FT misc_difference 1319^1320 FT /note="4 bases in the mouse genome, GCTC, are not found in FT cDNA." FT misc_difference 1433..1435 FT /note="in the mouse genome : TCT." FT misc_difference 1436^1437 FT /note="3 bases in the mouse genome, GCT, are not found in FT cDNA." FT misc_difference 1438 FT /note="'G' in cDNA is 'C' in the mouse genome." FT misc_difference 1529 FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 1662..1677 FT /note="polyA tail: 16 bases do not align to the mouse FT genome." XX SQ Sequence 1677 BP; 335 A; 459 C; 484 G; 399 T; 0 other; gtcggccggc caagatggca gcgtcctgcg tggcgctgct ggtcctggcg ctgctgttgc 60 tggtgctgct gctgggcttg tggaagcgtg ggcggcaaac gggcagggcc cggcatatgg 120 tcgtcgtggt gctgggcgac gtgggccgca gcccccgcat gcagtaccac gcgctgtcat 180 tggcccagag cggcttttcg gtgacgctgc tggggttcta cactgggccc cgaattctcc 240 agtatggagt caaggttgta tttcaggcag tgtacttgct gtggaagatg atgcgcatgg 300 accctgcagc ctacatcttc ctccagaacc ctccaggtct gcctgctatt gccgtctgct 360 ggtttgtggg ctgcatttgt gggagcaaat tggtcatcga ctggcacaac tatggctact 420 ccatcatggg cttggtccat ggcccccgcc accccattgt gctgctggcc aaatggtatg 480 agaagttctt cgggcgcctg tcccacctga acctgtgtgt gaccaatgct atgcgggagg 540 acctggcaga gaactggtgt gtcagggctg tgacgctcta cgacaagcca gcatctttct 600 ttaaggagac acccctggac ctgcagcatg aactctttat gaagctgagc cacacgtact 660 ctcctttcca gagctgctca gatccctcac atcctgacac agagaggtcg gccttcactg 720 agagggattg tcagagcggg gttgtgaggc gtctgcatgg gcggccagca ctgctcgtga 780 gcagcacaag ctggacagag gacgaggact tctccatcct gcttcgagca ttagaaaagt 840 ttgagcaaca agcactcact ggagacagcc tcccttccct cgtctgtgtg ataacaggga 900 agggaccgct cagagagcac taccgccacc tcatcagcca gaagcacctt aggcacatcc 960 ggttctgcac cccatggctg gaagccgagg actacccact gcttctaggg tcagcggatc 1020 tgggtgtctg tctgcacatg tcctccagtg gtctggacct gcccatgaag gtggtggaca 1080 tgtttgggtg ccacttgcct gtgtgtgccg tgaacttcaa gtgtctgcac gagcttgtaa 1140 gacatggaga gaatggtctg gtcttcaagg atgctgagga gctggcagct cagctgcaga 1200 tgcttttctc aaagttccca gaccctgctg gaaagctaag ccagttccgg aagaaactgc 1260 aggagtcgag gcagcaacgc tgggatgaga gctggcagca cactgtgctc cctctgctca 1320 ctcacagatg acccccaggc cccatccacc ctgtggccac ccttcctgcc ggggcttttg 1380 agtgccccct agtggtcata agcctgagga cagcagtggg cgacagctag gaagagagtg 1440 atctggcagc tctcttctgt tctgagcact tctgttactt ccagtgtccc tgccaacttc 1500 tcagtccctg ggtttttgtt tctggactcg tcacatccct tgcgttctgg ttctgctgtg 1560 agctctggga tagcctgtgt tcactgggtt tggctgagca aggctgaact gtctgacagg 1620 acagtcatac ttaataaatg tatatattta tttgtacaat gaaaaaaaaa aaaaaaa 1677 // |
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