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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC009086; SV 1; linear; mRNA; STD; MUS; 1386 BP.
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AC   BC009086;
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DT   08-JUN-2001 (Rel. 68, Created)
DT   19-MAR-2009 (Rel. 100, Last updated, Version 16)
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DE   Mus musculus family with sequence similarity 3, member C, mRNA (cDNA clone
DE   MGC:6557 IMAGE:2811008), complete cds.
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KW   MGC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
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RN   [1]
RP   1-1386
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1386
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (30-MAY-2001) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000154983.
DR   Ensembl-Gn; ENSMUSG00000029672; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000081288; Mus_musculus.
DR   ImaGenes; IMAGp998K096957Q.
DR   ImaGenes; IRAKp961P045Q.
DR   ImaGenes; IRAVp968H0510D.
DR   ImaGenes; IRAVp968O103Q.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Baylor College of Medicine Human Genome
CC   Sequencing Center
CC   Center code: BCM-HGSC
CC   Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC   Contact: amg@bcm.tmc.edu
CC   Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC   Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC   A.N., Gibbs, R.A.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 5 Row: p Column: 4
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 42734495.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 37) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1386
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="mix FVB/N, C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Mam5"
FT                   /clone="MGC:6557 IMAGE:2811008"
FT                   /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months
FT                   old, gross tissue."
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   gene            1..1386
FT                   /gene="Fam3c"
FT                   /gene_synonym="Ilei"
FT   CDS             129..812
FT                   /codon_start=1
FT                   /gene="Fam3c"
FT                   /gene_synonym="Ilei"
FT                   /product="family with sequence similarity 3, member C"
FT                   /db_xref="GOA:Q91VU0"
FT                   /db_xref="MGI:107892"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q91VU0"
FT                   /protein_id="AAH09086.1"
FT                   /translation="MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGNLFARSALD
FT                   SAIRSTKPPRYKCGISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGI
FT                   NIALVNGKTGEVIDTKFFDMWGGDVAPFIEFLKTIQDGTVVLMATYDDGATKLTDEARR
FT                   LIAELGSTSITSLGFRDNWVFCGGKGIKTKSPFEQHIKNNKETNKYEGWPEVVEMEGCI
FT                   PQKQD"
FT   misc_difference 1376..1386
FT                   /gene="Fam3c"
FT                   /gene_synonym="Ilei"
FT                   /note="polyA tail: 11 bases do not align to the mouse
FT                   genome."
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SQ   Sequence 1386 BP; 394 A; 267 C; 375 G; 350 T; 0 other;
     cgcgatcggc gcgctcggga ggaggcggcg gcggtggcac ctcccgtcgg cctccgacag        60
     gactgacggc ggcgcgaccg cagacgggac cttcttttgg agacgtgcta gagagtgaga       120
     aggcaaaaat gagggtagca ggagctgcaa agttggtagt ggccgtggca gtattcttac       180
     tgaccttcta tgttatttct caagtatttg aaattaaaat ggatgcaagt ttaggaaatc       240
     tatttgctcg atccgcgctg gactcagcca ttcgttctac gaaacctccg aggtacaagt       300
     gtgggatctc aaaggcgtgc ccagagaagc attttgcttt taagatggct agtggagcag       360
     ccaatgtcgt gggacccaag atctgcctgg aggacaatgt tttgatgagt ggtgtgaaga       420
     ataatgtcgg aagaggaatc aatattgcct tggtaaatgg gaaaacaggg gaagtaatag       480
     acaccaaatt ttttgacatg tggggaggag atgtggcacc attcattgag tttttgaaga       540
     ccatacaaga cggaacagta gtgctaatgg ctacatacga tgatggagca accaaactca       600
     cggatgaggc acggcggctc attgctgaac tgggcagcac ttcgatcacc agtcttggtt       660
     tccgagataa ctgggtcttc tgtggtggga agggcattaa gacaaagagt ccctttgaac       720
     agcacataaa gaacaataag gaaacgaaca agtacgaggg atggcctgag gtggtggaga       780
     tggaaggatg tatcccccag aagcaagact gacgggaagg agcgagaggc gaggaggaac       840
     gcactttgac tctgcaggag agtggtcagg cagccgctct gtgtacatat ttcagtagca       900
     tgtggccgtc cagggtgtgc atgagcaaga ccgtctctgt cgattccagg attatttatt       960
     gctaacagaa atggctacct ttttgtaaat agtcttcatt gagccaatca ctgaactatt      1020
     tgtaagcaca tttccctgaa agtacaacgt gtagacgaca atggcaataa tgtattttaa      1080
     ttctaaaagc atattcaggg ggtaaccacg caggttgtac aggacgccga tatttatcct      1140
     ggttgctggg aaaccctatc atggaataat gtggctttta gggaggagat tttgttcgta      1200
     tacgtgtctc tgtataaaaa tctggcatgt tatggcagta cccttcaaat gaaagagatt      1260
     tttggctagt tgtctgtgta ctgtcacctt acagtccaac tcctgttgta tcttttcaca      1320
     gtctttattt ttgaccttcc aaagaaatcc agaaataaaa tgtttcacac aaaaaaaaaa      1380
     aaaaaa                                                                 1386
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