 |
|
EBI DbfetchID BC003886; SV 1; linear; mRNA; STD; MUS; 1545 BP. XX AC BC003886; XX DT 17-MAR-2001 (Rel. 67, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 17) XX DE Mus musculus guanosine monophosphate reductase 2, mRNA (cDNA clone MGC:6736 DE IMAGE:3590411), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1545 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1545 RG NIH MGC Project RA ; RT ; RL Submitted (28-FEB-2001) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSMUSG00000002326; Mus_musculus. DR Ensembl-Tr; ENSMUST00000002397; Mus_musculus. DR ImaGenes; IMAGp998F128758Q. DR ImaGenes; IRAKp961K1311Q. DR ImaGenes; IRAVp968G068D. DR ImaGenes; IRAVp968N122Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 11 Row: k Column: 13 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 19527299. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1545 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="Czech II" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Lu29" FT /clone="MGC:6736 IMAGE:3590411" FT /tissue_type="Mammary tumor metastatized to lung. Tumor FT arose spontaneously from a senescent normal mammary FT (clonal) outgrowth infected with the virus MMTV." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1545 FT /gene="Gmpr2" FT misc_difference 1..19 FT /gene="Gmpr2" FT /note="19 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 21 FT /gene="Gmpr2" FT /note="'T' in cDNA is 'G' in the mouse genome." FT misc_difference 24 FT /gene="Gmpr2" FT /note="1 base in cDNA is not found in the mouse genome." FT CDS 119..1165 FT /codon_start=1 FT /gene="Gmpr2" FT /product="guanosine monophosphate reductase 2" FT /db_xref="GOA:Q99L27" FT /db_xref="InterPro:IPR001093" FT /db_xref="InterPro:IPR005993" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR015875" FT /db_xref="MGI:1917903" FT /db_xref="UniProtKB/Swiss-Prot:Q99L27" FT /protein_id="AAH03886.1" FT /translation="MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVELTRSFSFRNSKQMY FT SGIPVIAANMDTVGTFEMARVLCKFSLFTAIHKHYSIHQWQEFASQNPDCLECLAASSG FT TGSADFEQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGE FT MVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGC FT SCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYSGG FT VAEYRASEGKIVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQV FT NPIFSNSQ" FT misc_difference 431 FT /gene="Gmpr2" FT /note="'A' in cDNA is 'T' in the mouse genome; amino acid FT difference: 'T' in cDNA, 'S' in the mouse genome." FT misc_difference 628 FT /gene="Gmpr2" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 1315 FT /gene="Gmpr2" FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 1384..1389 FT /gene="Gmpr2" FT /note="6 bases in cDNA are not found in the mouse genome." FT misc_difference 1503..1545 FT /gene="Gmpr2" FT /note="polyA tail: 43 bases do not align to the mouse FT genome." XX SQ Sequence 1545 BP; 437 A; 363 C; 400 G; 345 T; 0 other; cccacgcgtc cgcccacgcg tccgctgaag gctcatcgag gctgcacgcg gctagttgct 60 aagcaaaaga atctttggtc aactgccacc tgagtcaaag caacaggaac tttgcatcat 120 gcctcatatt gataatgatg tgaaacttga cttcaaggat gtcctgttga ggcccaaacg 180 cagcactctt aagtctcgaa gtgaggtaga gctcacaaga tcattttcgt tccggaactc 240 aaagcagatg tacagtggca tccctgtcat tgctgccaat atggataccg tgggcacttt 300 tgaaatggct agggttctct gtaagttctc cctgttcact gccatccata agcactacag 360 catccatcag tggcaagagt ttgctagcca gaatcctgac tgtcttgagt gtctagctgc 420 cagctcaggc acaggctctg ctgactttga gcagctggaa cagatcctgg aagctattcc 480 ccaagtcaaa tatatatgcc tggatgtggc taacggctac tctgaacatt ttgttgaatt 540 tgtaaaggat gtacggaagc gattccccca acacaccatc atggcaggaa atgtggtaac 600 aggagagatg gtagaagagt taatcctctc tggggctgac atcatcaaag tgggaattgg 660 tcctggctct gtctgtacaa ctcggaagaa aactggagtg gggtatccac agctcagtgc 720 agtgatggag tgtgcagatg ctgctcatgg cctcaaaggc catatcatct cagatggagg 780 ctgcagctgt cctggggatg tggcaaaggc ttttggggca ggggctgact ttgtgatgtt 840 gggtggcatg ctggccgggc acagtgaatc aggtggcgaa ctcattgaga gagatggcaa 900 gaaatataag ctcttctacg gaatgagttc tgaaatggcc atgaagaagt actcaggagg 960 tgtggctgag tacagggcct cagagggaaa gatagtagaa gtccccttta aaggcgatgt 1020 ggaacatact attcgtgaca tcctaggagg catccggtct acatgcacgt atgtaggggc 1080 tgctaaactg aaggaactaa gccggagaac tacttttatc cgagtcaccc agcaagtgaa 1140 tccaatcttc agcaattccc agtagaccca agaagcctac tttcctgagg cagcagcact 1200 gccactggag cctcccgaca gggcgtgcct ctcccactgc agcccctgtg gtggtggctg 1260 cctaattcag ttccagctct cactctactc acccatgcct ctagctgcac aatgctatgg 1320 cactacggga gaggcgagga aggagacgtg agatcaacaa atgagaccct ggggacagcc 1380 cccccccccg aagattagga agatgctaat ccacacagaa atggcagccc ttggtctgga 1440 aagggaaggc tgcgggaatc atgttaagca gcttcattaa atgacatcat cacgtgtcta 1500 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa 1545 // |
|